View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19255_low_9 (Length: 274)
Name: NF19255_low_9
Description: NF19255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19255_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 14680282 - 14680569
Alignment:
| Q |
1 |
ttcattatgatcaaaggctctcttgcctaaggaccataataacccaattctaaataagtttatgttcttaagttatgtcatattacaggtgctaattatg |
100 |
Q |
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| T |
14680282 |
ttcattatgatcaaaggctctcttgcctaaggaccataataacccaattctaaataagtttatgttcttaagttatgtcatattacaggtgctaattatg |
14680381 |
T |
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| Q |
101 |
aagataaacaatggcattttaatgtgatctagttcaatcaccagttgaacaaacacattactatacttcattcaactcaatttgatttatgaattcatgg |
200 |
Q |
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| T |
14680382 |
atgataagcaatggtattttaatgtgatgtagctcaatcaccagttgaacaaacacattactatacttcattcaactcaatttgatttatgaattcatgg |
14680481 |
T |
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| Q |
201 |
tacaactacagcccatgaagtaaattgttttggtc--------------catagcagtcaacattcatggctctcagttccctacatc |
274 |
Q |
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| T |
14680482 |
tacaactacagcccatgaagtaaattgttttggtccaatggaaaacattcatagcagtcaacattcatggctctcagttccctacatc |
14680569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 14683422 - 14683365
Alignment:
| Q |
168 |
tcattcaactcaatttgatttatgaattcatggtacaactacagcccatgaagtaaat |
225 |
Q |
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| T |
14683422 |
tcattcaactcaatttgatatatgaattcatggtacaactacagcccatgaagtaaat |
14683365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 14683668 - 14683570
Alignment:
| Q |
4 |
attatgatcaaaggctctcttgcctaagga----ccataataacccaattctaaataagtttatgttcttaagttatgtcatattacaggtgctaatta |
98 |
Q |
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| T |
14683668 |
attatgattaaaagctctcttgcctaaggaaggaccataacaacccaatgctaaatgagtttatgttcttaatttatgtcagattacagtttctaatta |
14683570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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