View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19256_high_12 (Length: 301)

Name: NF19256_high_12
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19256_high_12
NF19256_high_12
[»] chr4 (1 HSPs)
chr4 (1-292)||(53558459-53558750)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 53558750 - 53558459
Alignment:
Q  1 ttttttgtcaacgataaccactttagaggagctacctcatactcatacaccccaagaacaagagattccaaggtaactaacttactaacatttgcatata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  53558750 ttttttgtcaacgataaccactttagaggagctacctcatactcatacaccccaagaacaagagattctaaggtaactaacttgctaacatttgcatata 53558651  T
Q  101 attaagaaaatattactcaagcatcaatgtacattattatataatatatattcatgacattgtttccaagacctgcagcagttacaactcatcattctta 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  53558650 attaagaaaatattactcaagcatcgatgtacattattatataatatatattcatgacattgtttacaagacctgcagcagttacaactcatcatcctta 53558551  T
Q  201 tgatcaaacaaggcaacaaattagaataaaccagaaggttaaatacatatgattaatttagtactacagaccataacctagttcatattctt 292  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53558550 tgatcaaacaaggcaacagattagaataaagcagaaggttaaatacatatgattaatttagtactacagaccataacctagttcataatctt 53558459  T

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