View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19256_high_6 (Length: 464)
Name: NF19256_high_6
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 112 - 449
Target Start/End: Complemental strand, 31678800 - 31678463
Alignment:
| Q |
112 |
ttatgatagggattaatagcatctataggctcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgatttggaggctgtcat |
211 |
Q |
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| T |
31678800 |
ttatgatagggattaatagcatctataggctcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgatttggaggttgtcat |
31678701 |
T |
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| Q |
212 |
tgaagctaaggaacatagaagaagtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatggccataatatatggt |
311 |
Q |
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| T |
31678700 |
tgaagctaagaaacatagatgaagtattattaggttccaataatgtgatctcagaatttgataaagagattttgcaactatgatggccataatatatggt |
31678601 |
T |
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| Q |
312 |
tctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctattatat |
411 |
Q |
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| T |
31678600 |
tctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctataatat |
31678501 |
T |
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| Q |
412 |
gaatcacattgaattatgatcattcatcaagaataaat |
449 |
Q |
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| T |
31678500 |
gaatcacattgaattatgatcattcatcaagaataaat |
31678463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 31628498 - 31628928
Alignment:
| Q |
19 |
agcatagtatcatgcgtcaaataatcaaattcaagtttatagtcacatgagagagggttatcagatgagattaataggttgtgagcaatgtgattatgat |
118 |
Q |
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| T |
31628498 |
agcatagtagcatgcctgacataatcaaattcaagcttatagtctctcgagagagggttatctgatgatgttaattggtcctgagcaatttgattatgat |
31628597 |
T |
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| Q |
119 |
agggattaatagcatctataggctcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgatttggaggctgtcattgaagct |
218 |
Q |
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| T |
31628598 |
agggattaatagcatctatagactcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgatttggaggctgtcattgaagct |
31628697 |
T |
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| Q |
219 |
aaggaacatagaagaagtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatggccataatatatggttctgtat |
318 |
Q |
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| T |
31628698 |
aaggaacatagaagaagtactattaggttccaataatgtgatctctgaatttaataaagaggttttgcaattatgatggccataatatatggttctgtat |
31628797 |
T |
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| Q |
319 |
aatggagggtcctcttgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctattatatgaatc-- |
416 |
Q |
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| T |
31628798 |
aatggagggtcctcttgaattctttgcacatgtttcatagctgcacattcttcatcacttttgtaactgcatctgtagtagctcctataatatgaatcat |
31628897 |
T |
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| Q |
417 |
--acattgaattatgatcattcatcaagaat |
445 |
Q |
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| T |
31628898 |
atatattgaattatgattattcattaagaat |
31628928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 31678878 - 31678821
Alignment:
| Q |
19 |
agcatagtatcatgcgtcaaataatcaaattcaagtttatagtcacatgagagagggt |
76 |
Q |
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| T |
31678878 |
agcatagtagcatgcctgaaattatcaaattcaagtttatagtcacatgagaaagggt |
31678821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 365
Target Start/End: Complemental strand, 31657265 - 31657175
Alignment:
| Q |
275 |
aagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcaca |
365 |
Q |
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| T |
31657265 |
aagagcttttgcaagtgtgatggtcataatatgtagtccggtacaaaggagggttctcttgaattctttgaacatgtttgattgcttcaca |
31657175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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