View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19256_high_9 (Length: 415)
Name: NF19256_high_9
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 3652519 - 3652111
Alignment:
| Q |
1 |
tctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaaatagggttgcttcaactcc |
100 |
Q |
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| T |
3652519 |
tctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaaatagggttgctacaactcc |
3652420 |
T |
|
| Q |
101 |
tatgtttctctcctaaactatgaagtcaacttatcactctatgaaataatgttgattaatagttaatcaagaatcaaaatatatatacaattgtgtttgt |
200 |
Q |
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| T |
3652419 |
tatgtttctctcctaaactatgaagtcaacttatcactctatgaaataatgttgattaatagttaatcaagaatcaaaatatatatacaattgtgtttgt |
3652320 |
T |
|
| Q |
201 |
gttatgtgtaactcaatgctataccactaattgtatagtggtgagcctcattatatactatgttatgttgcatttagctattttatttctatgcatgaat |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3652319 |
gttatgtgtaactcaatgctatacaactaattgtatagtggtgagcctcattatatactatgctatgttgcatttagctattttatttctatgcatgaat |
3652220 |
T |
|
| Q |
301 |
ttcataaatggtgttgcaaatgttgttatggtatttccttttcataataaataataaaaaggttttatttgtaccctactactcttcgaccacatgttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3652219 |
ttcataaatggtgttgcaaatgttgttatggtatttccttttcataataaataataaaaaggttttatttgtaccctactactcttggaccacatgttta |
3652120 |
T |
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| Q |
401 |
ggttaatat |
409 |
Q |
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| T |
3652119 |
ggttaatat |
3652111 |
T |
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