View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19256_low_10 (Length: 384)

Name: NF19256_low_10
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19256_low_10
NF19256_low_10
[»] chr8 (13 HSPs)
chr8 (18-384)||(6364695-6365061)
chr8 (34-284)||(6353956-6354203)
chr8 (34-284)||(7460966-7461213)
chr8 (39-290)||(6425506-6425754)
chr8 (39-168)||(6290726-6290855)
chr8 (39-234)||(6333403-6333595)
chr8 (39-267)||(6392437-6392665)
chr8 (39-267)||(6411577-6411805)
chr8 (39-234)||(6275978-6276170)
chr8 (39-168)||(6322953-6323082)
chr8 (39-170)||(6371533-6371664)
chr8 (37-161)||(6265475-6265599)
chr8 (228-276)||(6265663-6265711)
[»] chr2 (2 HSPs)
chr2 (40-147)||(42686798-42686905)
chr2 (40-162)||(42694694-42694816)


Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 6364695 - 6365061
Alignment:
Q  18 ggatataatttataaatattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364695 ggatataatttataaatattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgat 6364794  T
Q  118 ggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364795 ggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatg 6364894  T
Q  218 tcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttttcagatacgttttctctccgactt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  6364895 tcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttgccagatacgttttctctcccactt 6364994  T
Q  318 tgcctttaccggtttttcctatacaaaaattggactctcaatttcactgatgatgattttaaatagt 384  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364995 tgccttttccggtttttcctatacaaaaattggactctcaatttcactgatgatgattttaaatagt 6365061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 34 - 284
Target Start/End: Original strand, 6353956 - 6354203
Alignment:
Q  34 tattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttgga 133  Q
    |||||||||||||||||||||||| ||||| |  |||||||| |||||||  ||||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  6353956 tattcttaccttgttggcaaagaagatgcggtcggttttgtactttttagaattgtaaatccatgagttgcagacaaagtggatggatccatggtttgga 6354055  T
Q  134 acatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaa 233  Q
    ||||||||||| ||||| || |||||||||||||   ||||||||| | |||| || || ||||||||||| ||| ||||||||| | ||||||||||||    
T  6354056 acatcttcaagtgtcaaactcacaaggaagaatt---caccttgcataaaattatcgatgtaaaaagctccgggaattcccatgttactgtcccattcaa 6354152  T
Q  234 attcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa 284  Q
    | | ||||||||||||||||||||| |||||||||||||| | ||||||||    
T  6354153 aatgaatactgaaagcattttgtttgtctcccaatgttggtatggaggtaa 6354203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 34 - 284
Target Start/End: Original strand, 7460966 - 7461213
Alignment:
Q  34 tattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttgga 133  Q
    |||||||||||||||||||||||| ||||| |  |||||||| |||||||  |||| || ||||||||||||||||||||||||||||||||||||||||    
T  7460966 tattcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgtgaatccatgagttgcaaacaaagttgatggttccatggtttgga 7461065  T
Q  134 acatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaa 233  Q
    ||||||||||| ||||| || |||||||||||||   ||||||||| ||| || ||||||||||||||||||||| ||||||||  | ||||||||| ||    
T  7461066 acatcttcaagtgtcaaactcacaaggaagaatt---caccttgcatatagttatcaatataaaaagctcctggaattcccatggtactgtcccattgaa 7461162  T
Q  234 attcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa 284  Q
    | | |||||||||||||  ||| || || ||||||||||| | ||||||||    
T  7461163 aatgaatactgaaagcagattgcttgtcccccaatgttgggagggaggtaa 7461213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 290
Target Start/End: Original strand, 6425506 - 6425754
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    |||||||||| || || || ||||| | | ||||||| |||||  | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6425506 ttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaagagttgcaaacaaagttgatggttccatggtttggaacatc 6425605  T
Q  139 ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaattca 238  Q
    |||||| ||||| || ||||||||||| |   ||  ||||| | ||||||||||||| || ||||||||| ||||||||||| || |||||||||| | |    
T  6425606 ttcaagtgtcaaactcacaaggaagaact---catgttgcaaaaaattctcaatatagaatgctcctggaattcccatgtcactgccccattcaaaatga 6425702  T
Q  239 atactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacac 290  Q
    | |||| |||||||||| || ||||| |||||||| | ||||||||||||||    
T  6425703 acactgtaagcattttgcttgtctcctaatgttggtatggaggtaataacac 6425754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 6290726 - 6290855
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    ||||||||||||||||||| ||||||| ||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  6290726 ttaccttgttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgcaaacaaagttgatggttccatggttgggaacatc 6290825  T
Q  139 ttcaagagtcaagctgacaaggaagaattc 168  Q
    |||||| ||||| || ||||| ||||||||    
T  6290826 ttcaagggtcaaacttacaagaaagaattc 6290855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 39 - 234
Target Start/End: Original strand, 6333403 - 6333595
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    |||||||||| | |||||| |||||||| ||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||| |||    
T  6333403 ttaccttgttcgtaaagaagatgcgtttcgttttatactttttagcattgtaaatccatgagttgcaaacaaagttgatggttccatggatgggaatatc 6333502  T
Q  139 ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa 234  Q
    |||||| ||||| || |||||||||||||   | ||| |||   |||| ||||||||||| ||||||||| ||||||| ||| |||||||||||||    
T  6333503 ttcaagcgtcaaacttacaaggaagaatt---ctcctagcatgaaattttcaatataaaatgctcctggaattcccatctcactgtcccattcaaa 6333595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 39 - 267
Target Start/End: Original strand, 6392437 - 6392665
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    ||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| |||||||||||||| ||||||  ||||| ||||| ||  ||||||    
T  6392437 ttaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacatc 6392536  T
Q  139 ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg---tcccattcaaat 235  Q
    |||||| ||||| || |||||||||| ||   || |||||  | |||||| || ||| |||||||||||| ||||||||| ||||   |||||||||||     
T  6392537 ttcaagggtcaaactcacaaggaagattt---catcttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattgggatcccattcaaaa 6392633  T
Q  236 tcaatactgaaagcattttgtttatctcccaa 267  Q
    | ||||||||||||||||||| | ||||||||    
T  6392634 tgaatactgaaagcattttgtatgtctcccaa 6392665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 39 - 267
Target Start/End: Original strand, 6411577 - 6411805
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    ||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| |||||||||||||| ||||||  ||||| ||||| ||  ||||||    
T  6411577 ttaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacatc 6411676  T
Q  139 ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg---tcccattcaaat 235  Q
    |||||| ||||| || |||||||||| ||   || |||||  | |||||| || ||| |||||||||||| ||||||||| ||||   |||||||||||     
T  6411677 ttcaagggtcaaactcacaaggaagattt---catcttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattgggatcccattcaaaa 6411773  T
Q  236 tcaatactgaaagcattttgtttatctcccaa 267  Q
    | ||||||||||||||||||| | ||||||||    
T  6411774 tgaatactgaaagcattttgtatgtctcccaa 6411805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 234
Target Start/End: Original strand, 6275978 - 6276170
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    ||||||||||||||||||||||||||| ||||||||| |||  |   ||||||| |||||||||||||||||||||||||||||||||||| |||| |||    
T  6275978 ttaccttgttggcaaagaaaatgcgttcagttttgtactttcgacaattgtaaatccatgagttgcaaacaaagttgatggttccatggttaggaatatc 6276077  T
Q  139 ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa 234  Q
    |||||| || || || ||||| |||||||   | ||| |||   |||||||||||||||| ||||||||| ||||||| ||| | |||||||||||    
T  6276078 ttcaagtgttaaacttacaagaaagaatt---ctcctagcatgaaattctcaatataaaatgctcctggaattcccatctcactatcccattcaaa 6276170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 6322953 - 6323082
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    ||||||||||||| ||||| |||||||| ||||| || || | |||  |||||| |||||||||||| |||||||||||||||||||||||||||| |||    
T  6322953 ttaccttgttggcgaagaagatgcgtttcgttttatacttgtcagcactgtaaatccatgagttgcatacaaagttgatggttccatggtttggaatatc 6323052  T
Q  139 ttcaagagtcaagctgacaaggaagaattc 168  Q
    |||||| ||||| || ||||||||||||||    
T  6323053 ttcaagtgtcaaacttacaaggaagaattc 6323082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 6371533 - 6371664
Alignment:
Q  39 ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc 138  Q
    |||||||||||| |||||| ||||| | ||  |  || |||||||| ||||||| ||||||||||||   |||||||||||||||||| |||||||||||    
T  6371533 ttaccttgttggtaaagaagatgcgctcagagtgatagtttttagcattgtaaatccatgagttgcagttaaagttgatggttccatgatttggaacatc 6371632  T
Q  139 ttcaagagtcaagctgacaaggaagaattcac 170  Q
     | ||| ||||| || |||||||||| |||||    
T  6371633 attaagggtcaaactcacaaggaagagttcac 6371664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 6265475 - 6265599
Alignment:
Q  37 tcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaaca 136  Q
    |||||| |||||||| |||||||| || | ||||  ||| ||||| || ||||||||||| ||||||||||||||||  |||||||||  |||||| | |    
T  6265475 tcttacattgttggcgaagaaaatacgatcagttaggtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggata 6265574  T
Q  137 tcttcaagagtcaagctgacaagga 161  Q
    || ||||||||||| || |||||||    
T  6265575 tcatcaagagtcaaactcacaagga 6265599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 6265663 - 6265711
Alignment:
Q  228 attcaaattcaatactgaaagcattttgtttatctcccaatgttggcaa 276  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  6265663 attcaaattcaatgctgaaagctgtttgtttatctcccaatgttggcaa 6265711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 42686905 - 42686798
Alignment:
Q  40 taccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatct 139  Q
    |||||||||||||||||||||||||  | ||||||||  ||| |||||||||||||| |||||||| |||||    ||||||||||||||||||||||||    
T  42686905 taccttgttggcaaagaaaatgcgtggacttttgtaaagttttgcgttgtaaacccaagagttgcatacaaatcgaatggttccatggtttggaacatct 42686806  T
Q  140 tcaagagt 147  Q
    ||||||||    
T  42686805 tcaagagt 42686798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 42694694 - 42694816
Alignment:
Q  40 taccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatct 139  Q
    |||||| ||||||||||||||||| | |  |||||  | ||| || || |||| ||| |||||||| ||||||| |||| ||||||| |||||||  |||    
T  42694694 taccttattggcaaagaaaatgcggtcaagtttgtggtgtttggcattataaatccaggagttgcatacaaagtagatgcttccatgatttggaatgtct 42694793  T
Q  140 tcaagagtcaagctgacaaggaa 162  Q
    ||||||||||| || ||||||||    
T  42694794 tcaagagtcaaactcacaaggaa 42694816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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