View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19256_low_16 (Length: 256)
Name: NF19256_low_16
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 5592589 - 5592345
Alignment:
| Q |
1 |
tactaaatgatttatgaatatcatggtttataacagaagcatttggtatatgtacgtaacaggctttacatgaaattggagcaagaaaatatgtgttacc |
100 |
Q |
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| T |
5592589 |
tactaaatgatttatgaatatcatggtttataacagaagcatttggtatatgta----acaggctttacatgaaattggagcaagaaaatatgtgttacc |
5592494 |
T |
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| Q |
101 |
tgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgat |
200 |
Q |
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| T |
5592493 |
tgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgat |
5592394 |
T |
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| Q |
201 |
ttcaagcttaaatctctagtggatcatttcaataataagttctctgctg |
249 |
Q |
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| T |
5592393 |
ttcaagcttaaatctttagtggatcatttcaataataagttctctgctg |
5592345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 5586309 - 5586076
Alignment:
| Q |
12 |
ttatgaatatcatggtttataacagaagcatttggtatatgtacgtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcc |
111 |
Q |
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| T |
5586309 |
ttatgaatatcatggtttataatagaggcatttggtacat----ggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggtc |
5586214 |
T |
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| Q |
112 |
tattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaa |
211 |
Q |
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| T |
5586213 |
tattgggctgcactccaagtgccatctttactcatgggacagatgggtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaa |
5586114 |
T |
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| Q |
212 |
atctctagtggatcatttcaataataagttctctgctg |
249 |
Q |
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| T |
5586113 |
atctctagtggatcatttcaataataagttctctgctg |
5586076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 5575795 - 5575602
Alignment:
| Q |
56 |
gtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatat |
155 |
Q |
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| T |
5575795 |
gtaacagactttacatgacattggagctagaaaatatgtgttagtagggttaggccttttgggctgcacaccaagtgccatctttactcatggaacaaac |
5575696 |
T |
|
| Q |
156 |
gggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctctgctg |
249 |
Q |
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| T |
5575695 |
gggtcctgcgttgatgaggaaaatgcccctgcattgattttcaatttcaagcttaaatttttagtggatcatttcaataataagttctccgctg |
5575602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 5572712 - 5572666
Alignment:
| Q |
203 |
caagcttaaatctctagtggatcatttcaataataagttctctgctg |
249 |
Q |
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| T |
5572712 |
caagcttaaatctctagtggaacatttcaataataagttctctgctg |
5572666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 5580531 - 5580485
Alignment:
| Q |
203 |
caagcttaaatctctagtggatcatttcaataataagttctctgctg |
249 |
Q |
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| T |
5580531 |
caagcttaaatctctagtggaacatttcaataataagttctctgctg |
5580485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 5580614 - 5580576
Alignment:
| Q |
60 |
caggctttacatgaaattggagcaagaaaatatgtgtta |
98 |
Q |
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| T |
5580614 |
caggctctacatgacattggagcaagaaaatatgtgtta |
5580576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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