View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19256_low_19 (Length: 237)
Name: NF19256_low_19
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1615870 - 1615650
Alignment:
| Q |
1 |
atttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggttttttcttgggttttgattcgtctccacttaatccagttgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615870 |
atttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggttttttcttgggttttgattcgtctccacttaatccagttgcag |
1615771 |
T |
|
| Q |
101 |
cttagcggcttttattctactaattgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttgtttgtattgaatt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615770 |
cttagcggcttttattctactatttgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttgtttgtattgaatt |
1615671 |
T |
|
| Q |
201 |
atcttgctttttggttcttct |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1615670 |
atcttgctttttggttcttct |
1615650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27541514 - 27541475
Alignment:
| Q |
1 |
atttcctatacaccaaattccaatatagcttatagtgtaa |
40 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
27541514 |
atttcctatgcaccaaattcccatatagcttatagtgtaa |
27541475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University