View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19256_low_2 (Length: 772)
Name: NF19256_low_2
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 459 - 659
Target Start/End: Original strand, 42078812 - 42079012
Alignment:
| Q |
459 |
ttccgaagctttgatgtagatattatctggtataggaaatagaagtcgtgtgagacactaatatctacaaacttcattaaccatttaacctttatacatc |
558 |
Q |
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| T |
42078812 |
ttccgaagctttgatgtagatattatctggtataggaaatagaagtcgtgtgagacactaatatctacaaacttcattaaccatttaacctttatacatc |
42078911 |
T |
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| Q |
559 |
tgaactataatttttgaaaagaataacatgttcacattgtttggaaaatgttttgtctcgaagcagctccaactgaaggtttggaaaatcctttaatcct |
658 |
Q |
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| T |
42078912 |
tgaactataatttttgaaaagaataacatgttcacatggtttggaaaatgttttgtctccaagcagctccaactgaaggtttggaaaatcctttaatcct |
42079011 |
T |
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| Q |
659 |
g |
659 |
Q |
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| T |
42079012 |
g |
42079012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 657 - 753
Target Start/End: Original strand, 42079042 - 42079138
Alignment:
| Q |
657 |
ctgaagcagctggtctgatgaaagacgccaaccaagagcacccacattttcctctgtttgtgctgttgacttgactccaggaattagagttgtacct |
753 |
Q |
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| T |
42079042 |
ctgaagcagctggtctgatgaaagacgccaaccaagagcacccaaattttcctctgcctttgctattgacttgactccaggaattagagttgtacct |
42079138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 657 - 753
Target Start/End: Original strand, 42081471 - 42081567
Alignment:
| Q |
657 |
ctgaagcagctggtctgatgaaagacgccaaccaagagcacccacattttcctctgtttgtgctgttgacttgactccaggaattagagttgtacct |
753 |
Q |
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| T |
42081471 |
ctgaagtagctcgtttgaggagagacgccaacccagagcacccaaattttcctctgcttgtgttattgacttgactccaggaattggaattgtacct |
42081567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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