View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19256_low_3 (Length: 754)
Name: NF19256_low_3
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 2 - 624
Target Start/End: Original strand, 4946973 - 4947595
Alignment:
| Q |
2 |
gcatgtccaagaatattcgacaactttggctttcactttgatgacaacgaaaccacaccaaattgtttcccagttgaaactcatcctgatgatcaaacaa |
101 |
Q |
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|||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4946973 |
gcatctccaacattattcgacaactttggctttcactttgatgacaacgaaacgacaccaaattgtttcccagttgaaactcatcctgatgatcaaacaa |
4947072 |
T |
|
| Q |
102 |
ggccaaccaagaagatcaagacatcgagaaccccttcttcccagtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaa |
201 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947073 |
ggccaaccaagaagatcaagacatcgataaccccttcttcccagtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaa |
4947172 |
T |
|
| Q |
202 |
gcaattttataaccttgattattcagatgtaaaacctaaagtcgagaaaaggtttaatgaaaacaaggattttctaccagctttggtttctcaaggttct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947173 |
gcaattttataaccttgattattcagatgtaaaacctaaagtcgggaaaaggtgtaatgaaaacaaggattttctaccagctttggtttctcaaggttct |
4947272 |
T |
|
| Q |
302 |
tatgaagatcaaaaaatattttccaattatgataaccaagcgaatcagaccagaaacacttctcaagctcgagaacatgtaatggccgaaagaaaacgaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4947273 |
tatgaagatcaaaaaatattttccaattatgataaccaagcgaatcagaccagaaacactgctcaagctcgagaacatgtaatggccgaaagaaaacgaa |
4947372 |
T |
|
| Q |
402 |
gggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgta |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947373 |
gggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgta |
4947472 |
T |
|
| Q |
502 |
actccattcaaaccatttatatatcaacatatactactagaaaacgaaaaattaatgattcatattaaaggctgaagcgatgtgatctctctaattctct |
601 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
4947473 |
actccattcaaaccatttatatatcaacatatactacaagaaaacgaaaaattaatgattcatattaaaggctgaaacggtgtgatctctctaattctct |
4947572 |
T |
|
| Q |
602 |
tgtccctggcaatattagtgacc |
624 |
Q |
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||||||| ||||||||||||||| |
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| T |
4947573 |
tgtccctagcaatattagtgacc |
4947595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 685 - 728
Target Start/End: Original strand, 4947656 - 4947699
Alignment:
| Q |
685 |
tgagaaaaacagtataacctaatctgttcataagaaaatcaaat |
728 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4947656 |
tgagaaaaacagtataacctaatctgttcataagaaaataaaat |
4947699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 40441933 - 40441838
Alignment:
| Q |
368 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
463 |
Q |
| |
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|||||||| ||||| || |||||||||||||||||||||||||||| || || ||||| || ||||| | ||| ||||||| ||||| |||||| |
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| T |
40441933 |
gctcgagatcatgttatcgccgaaagaaaacgaagggaaaagcttagccagagattcattgcactttcctctattcttcctggactcaaaaaggta |
40441838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 40426845 - 40426750
Alignment:
| Q |
368 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
463 |
Q |
| |
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|||| ||| ||||| ||||||||||||| ||||||||||||||||| || || ||||| |||||||| | || ||||||| ||||| |||||| |
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| T |
40426845 |
gctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcatttctctttcatctcttcttcctggactcaaaaaggta |
40426750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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