View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19256_low_5 (Length: 494)
Name: NF19256_low_5
Description: NF19256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19256_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 14176120 - 14175761
Alignment:
| Q |
19 |
tattaatcataattatacataattcgacaatatttaatggtgtgtcacacaatttatctgagttcatttacaccaattactatatcaggtgaagtgttat |
118 |
Q |
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| T |
14176120 |
tattaatcataattatacataactcgacaatatttaatggtgtgtcacacaatttatctgagttcatttacaccaattactatatcaggtgaagtgttat |
14176021 |
T |
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| Q |
119 |
tctaataagagcataataatcaagggaaagggatctaacattattatgcacatttaatattctgcaaaacagtgtttgatgaatattaggagtacaaggg |
218 |
Q |
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| T |
14176020 |
tctaataagagcataataatcaagggaaagggatctaacattattatgcacatttaatattctccaaaacagtgtttgatgaatattaggagtacaaggg |
14175921 |
T |
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| Q |
219 |
tacctagcactcctcttatattggtatctaaacctatagttagtaactaatcataaattggccaaacactaaatacatttggtaatgctaaacctaaagg |
318 |
Q |
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| T |
14175920 |
tacctagcactccttttattttggtatctaaacctatagttaataactaatcataaattggccaaacactaaatacatttggtaatgctaaacctaaagg |
14175821 |
T |
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| Q |
319 |
aacccacctcaattttagccgataaacgattatgattcgctaatcccaatatcaagcttc |
378 |
Q |
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| T |
14175820 |
aacccacctcaattttagccgataaacgattatgattcgctaatcccaatatcaagcttc |
14175761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 14175768 - 14175714
Alignment:
| Q |
406 |
caagcctcccgcaagctgcaaattcagtccaaccatcaatccaaactcttaccaa |
460 |
Q |
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| T |
14175768 |
caagcttcccgcaagctccaaattcagtccaaccatcaatccaaactcttaccaa |
14175714 |
T |
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