View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19257_high_11 (Length: 229)
Name: NF19257_high_11
Description: NF19257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19257_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 44946524 - 44946715
Alignment:
| Q |
17 |
cacagaacgatgaacacataagtagatgataaagtaagtttcatggtatttccatatttttctactgaaacatttgaatttgcttctacatgcaaacttt |
116 |
Q |
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| T |
44946524 |
cacagaacgatgaacacataagtagatgataaagtaagtttcatggtatttccatatttttctactgaaacatttgaatttgcttctacatgcaaacttt |
44946623 |
T |
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| Q |
117 |
tcaatctgcattgtaacactttggaatgaactatcagtcttttttatgacaagttcaacacattgatgattgattaatgatcttcgatgagaaaaaggt |
215 |
Q |
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| T |
44946624 |
tcaatctgcattgtaacactttggaatgaactatcagtcttttttatgacaagttcaacac-------attgattaatgatcttcgatgagaaaaaggt |
44946715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 11452103 - 11451982
Alignment:
| Q |
55 |
tttcatggtatttccatatttttctactgaaacatttgaatttgcttctacatgcaaacttttcaatctgcattgtaacactttggaatgaactatcagt |
154 |
Q |
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| T |
11452103 |
tttcatggtatttccatgtttttctactaaaacatttgaatttgcttct--atacacactttt-tatctgtgttgtaactctttggaatgaactatcagt |
11452007 |
T |
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| Q |
155 |
---cttttttatgacaagttcaaca |
176 |
Q |
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| T |
11452006 |
gtctttttttctgacaagttcaaca |
11451982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 51568547 - 51568622
Alignment:
| Q |
29 |
aacacataagtagatgataaagtaagtttcatggtatttccatatttttctactgaaacatttgaatttgcttcta |
104 |
Q |
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| T |
51568547 |
aacacagaagtagatgataaagtaagtttcatgacatttccatatttttttgctgaaacatttgaattttcttcta |
51568622 |
T |
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