View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19257_high_8 (Length: 262)
Name: NF19257_high_8
Description: NF19257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19257_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 41806110 - 41806332
Alignment:
| Q |
24 |
attctcttcagtgcatatagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct |
123 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41806110 |
attctcttcagtgcttatagaagcccgtcttacattctttctacagttaacattc-tcttgttccgcgggacctataaaatcaaataacaaggagaatct |
41806208 |
T |
|
| Q |
124 |
cacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatttac |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41806209 |
cacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagaaaaaaacagtagtaagtgaaatatttagaagatttac |
41806308 |
T |
|
| Q |
224 |
ggcttgtgtttgtcaacctcattc |
247 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41806309 |
ggcttgtgtttgtcaacctcattc |
41806332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 41800036 - 41800202
Alignment:
| Q |
73 |
acattcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatc |
172 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41800036 |
acattccccttgttcttcgggacctataaaatcaaataaccaggagaatctaacaaaatcaaacacaaaccataaactgtgcaggaaaaggaaatgcaca |
41800135 |
T |
|
| Q |
173 |
taactttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctc |
243 |
Q |
| |
|
| |||||||||| |||||||| |||||| |||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
41800136 |
tcactttggagaataaaaaacagaagtaag----atatttagaagattcacggcttgtgtttttctacctc |
41800202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 24685192 - 24685329
Alignment:
| Q |
24 |
attctcttcagtgcatatagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct |
123 |
Q |
| |
|
||||||||| |||| |||| || | ||||| | |||||| | || |||||||||||||||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
24685192 |
attctcttctgtgcttataaaaccacatctcatattcttcatgcatttaacattcctcttgttcttggggacctataaaatcaaataaccagaagaatct |
24685291 |
T |
|
| Q |
124 |
cacaaaatcaaacacaaaccataaactttgcaggaaaa |
161 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24685292 |
cacaaaatcaaacacaaaccataaactgtgcaggaaaa |
24685329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 24631841 - 24632012
Alignment:
| Q |
75 |
attcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatcta |
174 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||| || ||| |||||||| | || |||||| ||||| ||| | |
|
|
| T |
24631841 |
attcctcttgttctttgggactaataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtgttggaaaaagaaatccatatc |
24631940 |
T |
|
| Q |
175 |
actttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattc |
247 |
Q |
| |
|
|||| | ||||| | ||||| |||||||||||||||||||||||||| ||||||| | |||| ||||||||| |
|
|
| T |
24631941 |
acttggaagaga-agaaacattagtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattc |
24632012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 24682519 - 24682594
Alignment:
| Q |
92 |
ggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaat |
167 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||||||||| ||||| ||||||| ||||||||||| |||| |
|
|
| T |
24682519 |
ggacctataaaatcaaagaaccaggagaatctcataaaatcaaacgcaaacaataaactgtgcaggaaaagtaaat |
24682594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 24653501 - 24653664
Alignment:
| Q |
58 |
ttctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct--cacaaaatcaaacacaaaccataaactttgca |
155 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||| |||||||||| || ||||||||||||| || ||||||| |||| |
|
|
| T |
24653501 |
ttcttcctacatttaacattcctctctttctttcggacctataaaatcaaagaaccaggagaatctcgcataaaatcaaacacacacaataaactgtgca |
24653600 |
T |
|
| Q |
156 |
gg--aaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatt |
220 |
Q |
| |
|
|| ||||| |||||||| | | | |||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
24653601 |
ggaaaaaagtaaatgcatatca-tatggaaaaag--aaacagtagtaagtgaaatatttagaagatt |
24653664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 24685331 - 24685394
Alignment:
| Q |
181 |
gagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctca |
244 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||| |||||| |||||||| |||||| |
|
|
| T |
24685331 |
gagagagaaaaacagtggtaagtgcaacatttagaagattcgcggcttttgtttgtctacctca |
24685394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 278689 - 278541
Alignment:
| Q |
24 |
attctcttcagtgcatatagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct |
123 |
Q |
| |
|
|||||||||||||| ||||||||| || || | |||| ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||| | |
|
|
| T |
278689 |
attctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttgggacctataatatcaaatgacaaggagaattt |
278590 |
T |
|
| Q |
124 |
cacaaaatc-aaacacaaaccataaactttgcaggaaaaggaaatgcat |
171 |
Q |
| |
|
|| |||||| ||| |||||||||||| || |||||||||||||||| |
|
|
| T |
278589 |
cagaaaatcaaaatccaaaccataaaccgtggtggaaaaggaaatgcat |
278541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University