View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19257_low_2 (Length: 591)
Name: NF19257_low_2
Description: NF19257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19257_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 59 - 574
Target Start/End: Complemental strand, 23698374 - 23697862
Alignment:
| Q |
59 |
tttagatacctcaaaaatagaatgtggaagaagaaccaaggatggtccgacaaatatttatcgaaagaagttagagaagtgtcagtgaaatcagtagctc |
158 |
Q |
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| T |
23698374 |
tttagatacctcaaaaatagaatgtggaagaagaaccaaggatggtccgacaaatatttatcgaaagaagttagagaagtgtcagtgagatcagtagctc |
23698275 |
T |
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| Q |
159 |
aagaaattccaacgtattgcatgagttcaatccttctacctgagtctttaggtgaggagttggagagaattgttnnnnnnnnnnnnnnnntattaattta |
258 |
Q |
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| T |
23698274 |
aagaaattccaacggattgcatgagttcaatccttctacctgagtctttaggtgaggagttggagagaattgttaaaaaaaaaat-----tattaattta |
23698180 |
T |
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| Q |
259 |
ggtgccactaatgaccattttacaaattttctcagggg-attcaaacttagcaccttgggtgacaaggataaactagaaataattaaatcatttcaatgg |
357 |
Q |
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| T |
23698179 |
ggtggcactaatgaccattttacaaattttcccggggggattcaaacttagcaccttgggtgacaaggataaactagaaataattaaatcatttcaatgg |
23698080 |
T |
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| Q |
358 |
aattcaaattaaacgattggaaaaagaattgactggcttaggtggaaaaagcttgctacgagaaaaggagcatgatgatatggggttttgccatttttac |
457 |
Q |
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| T |
23698079 |
aattcaaattaaacgattggaaaaagaattgactggcttaggtggaaaaagcttgctacgagaaaaggagcatgatgatatggggttttgccatttttac |
23697980 |
T |
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| Q |
458 |
tgcttcaattaggcaatgctaaggaagcagggtttgaacttattgatcaa-catgataacatactttctaaagtcttcacaacaaaatattatccagagg |
556 |
Q |
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| T |
23697979 |
tgcttcaattaggcaatgctagggaagcaatgttcgaacctattgatcaaccatgataccatactttctaaagtcttcacaacaaaatattatccagagg |
23697880 |
T |
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| Q |
557 |
ggaatttctagttgcaat |
574 |
Q |
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| T |
23697879 |
ggaatttctagttgcaat |
23697862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 360 - 550
Target Start/End: Complemental strand, 36719216 - 36719026
Alignment:
| Q |
360 |
ttcaaattaaacgattggaaaaagaattgactggcttaggtggaaaaagcttgctacgagaaaaggagcatgatgatatggggttttgccatttttactg |
459 |
Q |
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| T |
36719216 |
ttcaaataaaatgattggataaggaattaacttgcttaggtcggaaaagcttactatgagaaa-ggagcacagtggtatgtgatttcgccatttttacgg |
36719118 |
T |
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| Q |
460 |
cttcaattaggcaatgctaaggaagcagggtttgaacttattgatcaa-catgataacatactttctaaagtcttcacaacaaaatattatc |
550 |
Q |
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| T |
36719117 |
cttcaatttggcaatgttagggaagtaaggttgaaactaattgaccaaccatgatactatattttctaaagtcttcaaagaaaaatattatc |
36719026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 36719399 - 36719278
Alignment:
| Q |
69 |
tcaaaaatagaatgtggaagaagaaccaaggatggtccgacaaatatttatcgaaa-gaagttagagaagtgtcagtgaaatcagtagctcaagaaattc |
167 |
Q |
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||||| ||| || ||||||||||| |||||| ||| || | ||| ||||||| ||| | || ||||||| ||| |||||||| |||| |||||||| ||| |
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| T |
36719399 |
tcaaagataaaacgtggaagaagatccaagggtggacctagaaagatttatcaaaaagcaggtagagaattgttagtgaaatgagtatctcaagaatttc |
36719300 |
T |
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| Q |
168 |
caacgtattgcatgagttcaat |
189 |
Q |
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| T |
36719299 |
caacctactacatgagttcaat |
36719278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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