View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19257_low_6 (Length: 326)

Name: NF19257_low_6
Description: NF19257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19257_low_6
NF19257_low_6
[»] chr7 (11 HSPs)
chr7 (20-313)||(4631379-4631672)
chr7 (23-310)||(4667396-4667671)
chr7 (179-241)||(4637378-4637440)
chr7 (179-241)||(4711584-4711646)
chr7 (179-241)||(4864446-4864508)
chr7 (177-254)||(4654004-4654081)
chr7 (179-243)||(4696702-4696766)
chr7 (180-243)||(4644214-4644277)
chr7 (185-254)||(4783353-4783422)
chr7 (185-254)||(4815782-4815851)
chr7 (177-241)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (25-313)||(18925109-18925385)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 4631672 - 4631379
Alignment:
Q  20 caatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaacc 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631672 caatggccctatttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaacc 4631573  T
Q  120 aaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgaga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631572 aaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgaga 4631473  T
Q  220 agctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631472 agctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 4631379  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 310
Target Start/End: Complemental strand, 4667671 - 4667396
Alignment:
Q  23 tggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaac 122  Q
    ||||||| |||||||||||||| ||||||||||||||||||||      ||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  4667671 tggccctgtttttcttcgcctccatttttacccaacatcgtat------caaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaac 4667578  T
Q  123 cttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagc 222  Q
    ||||||||||||||||||||||  || || ||||||||| ||||||||| ||||||||||||||||||||||||||| || |     | |   ||||| |    
T  4667577 cttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaac 4667478  T
Q  223 taaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 310  Q
    || || ||||||||||||||||      |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667477 tagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  179 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 241  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  179 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 241  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  179 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 241  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  177 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 254  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  179 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 243  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  180 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 243  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  185 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 254  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  185 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 254  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  177 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 241  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 18925109 - 18925385
Alignment:
Q  25 gccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaacct 124  Q
    |||||||||||||||||||  ||||||||||||||||||||      ||| || ||||||||| | ||||||||||||| |||||||| ||||||||  |    
T  18925109 gccctatttttcttcgccttcatttttacccaacatcgtat------caaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgt 18925202  T
Q  125 tacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagcta 224  Q
     ||||||||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| ||    
T  18925203 cacccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagtta 18925302  T
Q  225 aacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 313  Q
    || ||||||||||||||   ||| ||   || ||| |||  ||| | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  18925303 aatataactttcattcc---aaacac---cataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

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