View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19257_low_7 (Length: 311)
Name: NF19257_low_7
Description: NF19257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19257_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 3303955 - 3304238
Alignment:
| Q |
14 |
aacctgtggcaaaagatactatgcaaataacaaacttctgcagcttgggatatatctcattgccataagactctgacaactgtaccagaattttattttc |
113 |
Q |
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| T |
3303955 |
aacctgaggcaaaagatactatgcaaataacaaacttctgcagcttgggatatatctcattgccataagactctgacaactgtaccagaattttattttc |
3304054 |
T |
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| Q |
114 |
aaatcctatgcaaaatttgatcagaaaactttgatctttttctgaaatcttcaagttgagtatcaattttatttatcttttccacatctctcaccatcct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3304055 |
aaatcctatgcaaaatttgatcagaaaactttgatctttttctgaaatcttcaatttgactatcaattttatttatcttttccacatctctcaccatcct |
3304154 |
T |
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| Q |
214 |
ttgtaaacaattaagtccacgttttacttcgtagtcaacattgaaaatatgactatattgcaaaatatgattaaggtaataagt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3304155 |
ttgtaaacaattaagtccacgttttacttcgtagtcaacattgaaaatatgactatattgcaaaatatgatgaaggtaataagt |
3304238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 3292207 - 3292318
Alignment:
| Q |
158 |
aaatcttcaagttgagtatcaattttatttatcttttccacatctctcaccatcctttgtaaacaattaagtccacgttttacttcgtagtcaacattga |
257 |
Q |
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|||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||| || ||||| ||| ||| ||||| ||| |||||||| |||| |
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| T |
3292207 |
aaatctacaatttgatcatcaatcttatttatcttttccacatctctcaccatcctttttagacaatctagttcacatttta-ttcatagtcaactttga |
3292305 |
T |
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| Q |
258 |
aaatatgactata |
270 |
Q |
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| T |
3292306 |
aattatgactata |
3292318 |
T |
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