View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19257_low_8 (Length: 305)

Name: NF19257_low_8
Description: NF19257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19257_low_8
NF19257_low_8
[»] chr2 (8 HSPs)
chr2 (19-297)||(5481752-5482022)
chr2 (19-264)||(5489801-5490046)
chr2 (19-262)||(5476676-5476922)
chr2 (19-186)||(5484616-5484783)
chr2 (19-263)||(5500618-5500862)
chr2 (19-248)||(5495583-5495812)
chr2 (31-214)||(5467056-5467239)
chr2 (177-262)||(5485000-5485084)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 5481752 - 5482022
Alignment:
Q  19 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  5481752 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttatcaactcgccccacgagttgtttcgatctgtgaataagatgtcttc 5481851  T
Q  119 tttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcagga 218  Q
    | ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5481852 tatgttagagttgcacttgtcctctt--------gttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcagga 5481943  T
Q  219 aatccttttcattcctcaatgccttcttggatattcaacatgagcagtctcatagaactagatcttcgtaattcatctc 297  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5481944 aatccttttcattcctcaataccttcttggatattcaacatgagcagtctcatagaactagatctttgtaattcatctc 5482022  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 5489801 - 5490046
Alignment:
Q  19 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttc 118  Q
    |||| ||| ||||||||||||||| |||||||| |||| ||||||  ||  ||||||||||||| || |||||||| | |  ||||||||||||||| |     
T  5489801 ggctatctgctctgtcttcgcttcgatatcttgacatgaattttgtaaacattaccaactcgccacatgagttgttccaagttgtgaataagatgtcata 5489900  T
Q  119 tttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcagga 218  Q
    ||||||||| ||||| ||| | |||||||||||||  ||||||||| |||| ||||| |||||||||   |||||||||||||| ||||||||||| |||    
T  5489901 tttgttagaattgcatttggcttcttgcaatcttggcgctctccctccatcgtcaccatttttaaattctacatcactttctgtgcttgatctctctgga 5490000  T
Q  219 aatccttttcattcctcaatgccttcttggatattcaacatgagca 264  Q
    |||| |||| |||||||||| ||||||||||| |||||||||||||    
T  5490001 aatcattttaattcctcaataccttcttggatgttcaacatgagca 5490046  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 5476676 - 5476922
Alignment:
Q  19 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtt---tcgaactgtgaataagatgtc 115  Q
    |||| ||| |||||||||| |||||||||||||||||||||| || |||  ||||||||||| ||| | |||||||   |||| ||||||| ||||||||    
T  5476676 ggctttctgctctgtcttcacttcaatatcttggcatggattatgtcaatgttaccaactcgtccctctagttgttgtttcgagctgtgaaaaagatgtc 5476775  T
Q  116 ttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctca 215  Q
    |||| ||||||||||||| ||| | ||||||    ||  | |||||||| || |||| || ||||||||||| ||| |||||||||| |||||||||||     
T  5476776 ttctctgttagagttgcatttggcttcttgcggaatttcttctctccctccaacttcgccatttttaaatattacaccactttctgtgcttgatctctct 5476875  T
Q  216 ggaaatccttttcattcctcaatgccttcttggatattcaacatgag 262  Q
    |||||||||||  || ||||||||||||||||| | |||||||||||    
T  5476876 ggaaatcctttaaatacctcaatgccttcttggctgttcaacatgag 5476922  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 5484616 - 5484783
Alignment:
Q  19 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttc 118  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||| |||  | |||||||||||||| |||||||||||| |||||||||||||||| ||    
T  5484616 ggctctctgctctatcttcgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatc 5484715  T
Q  119 tttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaata 186  Q
    | | ||||||||||| ||||||||||||||||||| | |||| ||  | |||||||| ||||||||||    
T  5484716 tctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata 5484783  T

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Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 5500618 - 5500862
Alignment:
Q  19 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttc 118  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||  |||  | ||||||||| |||  |||||||||||| |||||||||||||||| ||    
T  5500618 ggctatctgctctgacttcgcttcaatatcttggcatggattttatcaacatcaccaactcgtcccgtgagttgtttcgagctgtgaataagatgtcatc 5500717  T
Q  119 tttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcagga 218  Q
    | | ||||||||||| ||||||| ||||| ||||| | | |||||| || ||||||| ||| ||||||| ||||| |||||    ||| ||||| | |||    
T  5500718 tctattagagttgcatttgtccttttgcagtcttgcttcactccctccagcttcaccatttctaaatattacatctctttccaggctttatctcactgga 5500817  T
Q  219 aatccttttcattcctcaatgccttcttggatattcaacatgagc 263  Q
    |||| |||| ||||| | || ||||||||| | ||||||||||||    
T  5500818 aatctttttaattccactataccttcttggctgttcaacatgagc 5500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 5495583 - 5495812
Alignment:
Q  19 ggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttc 118  Q
    |||||||| || ||||||| ||||||| |||| ||||| ||| ||  ||  |||||| ||||||||| |||| ||||| |||| ||||||||||  | ||    
T  5495583 ggctctctgctttgtcttcacttcaatttcttagcatgaattatgtaaatattaccacctcgccccatgagtggtttcaaactatgaataagataccatc 5495682  T
Q  119 tttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcagga 218  Q
    | | ||||||||||| ||    | ||||||||||| |  ||||||  |||||||||| ||||||||||| |||||||||||||| ||||||||||| |||    
T  5495683 tctattagagttgcatttaatgtattgcaatcttgcttttctcccaccatcttcaccatttttaaatattacatcactttctgtgcttgatctctctgga 5495782  T
Q  219 aatccttttcattcctcaatgccttcttgg 248  Q
    ||||||||| |||| || || |||||||||    
T  5495783 aatccttttaattcatctataccttcttgg 5495812  T

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Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 5467056 - 5467239
Alignment:
Q  31 tgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttctttgttagagtt 130  Q
    ||||||||||||||||||||  |||||| ||||  ||  | ||  |||| ||||  |||||||||||| |||| ||||||||| | ||| ||||||||||    
T  5467056 tgtcttcgcttcaatatcttaacatggactttgttaacatcacagactcaccccgtgagttgtttcgagctgttaataagatgccatctctgttagagtt 5467155  T
Q  131 gcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctc 214  Q
    ||| ||||||| ||||||||||| ||| |||||| |||||||||| |||||||||||  ||||||||| ||| ||||| |||||    
T  5467156 gcatttgtccttttgcaatcttgctgcactccctccatcttcaccctttttaaatatttcatcactttatgtgcttgacctctc 5467239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 5485000 - 5485084
Alignment:
Q  177 tttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgag 262  Q
    ||||||||||| |||||||||| |||  |||||||||| |||||||||||| |||||||| | ||||||||||| |||||||||||    
T  5485000 tttttaaatattacatcactttatgtg-ttgatctctctggaaatccttttaattcctcattaccttcttggatgttcaacatgag 5485084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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