View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19258_high_10 (Length: 334)
Name: NF19258_high_10
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 46864295 - 46864590
Alignment:
| Q |
17 |
atgatgtacaaattatagtggttggatgtatgttattttcattgctgcgtatgatattttcatgtttgttttgttattttgttcatacaataaatgctgc |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46864295 |
atgatgtacaaattatagtggttgaatgtatgttattttcattgctgcgtat------------tttgttttgttattttgttcatacaataaatgctgc |
46864382 |
T |
|
| Q |
117 |
ttcagtttaaaacagtgttgtcaaatatcagaggtcaaatggcagatttgtagcaagtgccatggccaatttgtgaaggatggcgacgccatggtgtttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46864383 |
ttcagtttaaaacagtgttgtcaaatatcagcgttcaaatggcagatttgtagcaagcgccatggccaatttgtgaaggatggcgacgccatggtgtttt |
46864482 |
T |
|
| Q |
217 |
atggtggctttaaattgcacatttggttttccaccatccatcatcgttaacactggtttaaaattaatttaccacttgtctgtatgattagtgattactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46864483 |
atggtggctttaaattgcacatttggttttccaccatccatcatcgttaacactggtttaaaattaatttaccacttgtctgtatgattagtgattactt |
46864582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 32255305 - 32255347
Alignment:
| Q |
174 |
tgccatggccaatttgtgaaggatggcgacgccatggtgtttt |
216 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
32255305 |
tgccatggccaatttgtgatagatagcgacgccatggtgtttt |
32255347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 40416761 - 40416724
Alignment:
| Q |
186 |
tttgtgaaggatggcgacgccatggtgttttatggtgg |
223 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
40416761 |
tttgtgaaggatggcgacgacatggcgttttatggtgg |
40416724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30750042 - 30750090
Alignment:
| Q |
175 |
gccatggccaatttgtgaaggatggcgacgccatggtgttttatggtgg |
223 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
30750042 |
gccacggccaatttgtgaaagatggcggtgccatggtgttctatggtgg |
30750090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University