View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_high_11 (Length: 329)
Name: NF19258_high_11
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 52591407 - 52591540
Alignment:
| Q |
175 |
gtggaaaaactaggtttatatattttattgattttgtttatcatattaagcattctattatctttgtctttaaagtagtatgtaaatcagattcattgtt |
274 |
Q |
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| T |
52591407 |
gtggaaaaactaggtttatatattttattgattttgtttatcatattatgcattctattatctttgtctttaaagtagtatgtaaatgagattcattgtt |
52591506 |
T |
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| Q |
275 |
attttggtactcataaatttcatggaaaaagtta |
308 |
Q |
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| T |
52591507 |
attttggtactcataaatttcatggaaaaagtta |
52591540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 52591253 - 52591373
Alignment:
| Q |
18 |
acaggacaagctaggattcaatgggtgcaaaagaattacatgatttacaattattgcactgatactaagcgatttcctcaaggcccccctcctgaatgct |
117 |
Q |
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| T |
52591253 |
acaggacaagctaggattcaatgggtgcaaaagaattacatgatttacaattattgcactgatactaagcgatttcctcaaggcctccctcctgaatgct |
52591352 |
T |
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| Q |
118 |
cacttgcatgaaaacaaaaac |
138 |
Q |
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| T |
52591353 |
cacttgcatgaaaacaaaaac |
52591373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 53495587 - 53495618
Alignment:
| Q |
48 |
aagaattacatgatttacaattattgcactga |
79 |
Q |
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| T |
53495587 |
aagaattacatgatttacaattattgcactga |
53495618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 53502661 - 53502718
Alignment:
| Q |
37 |
aatgggtgcaaaagaattacatgatttacaattattgcactgatactaagcgatttcc |
94 |
Q |
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| T |
53502661 |
aatgggtgcagaagaattacatgatatacaattactgcaaagatacaaaacgatttcc |
53502718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 16942908 - 16942949
Alignment:
| Q |
39 |
tgggtgcaaaagaattacatgatttacaattattgcactgat |
80 |
Q |
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| T |
16942908 |
tgggtgcaaaagaattacatgatatataattactgcactgat |
16942949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 17013573 - 17013614
Alignment:
| Q |
39 |
tgggtgcaaaagaattacatgatttacaattattgcactgat |
80 |
Q |
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| T |
17013573 |
tgggtgcaaaagaattacatgatatataattactgcactgat |
17013614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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