View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19258_high_13 (Length: 283)

Name: NF19258_high_13
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19258_high_13
NF19258_high_13
[»] chr1 (3 HSPs)
chr1 (9-171)||(44203041-44203217)
chr1 (167-265)||(44204025-44204123)
chr1 (9-123)||(44191759-44191873)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 44203041 - 44203217
Alignment:
Q  9 agcagagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44203041 agcaaagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct 44203140  T
Q  109 tttatacacttaaac--------------ctaaattgatactcttatactgctgatgtaaaatgaatgtttcgtttt 171  Q
    |||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44203141 tttatacacttaaactaggagatataaagctaaattgatactcttatactgctgatgtaaaatgaatgtttcgtttt 44203217  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 44204025 - 44204123
Alignment:
Q  167 gttttcttacacatagacagtagtacctaaagcacagagctattcaaacacaaaatgagagaatatttatactacaacttagagattaatcacaccttt 265  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44204025 gttttcttacacatagacagtagtacctaaagcacagagttattcaaacacaaaatgagagaatatttatactacaacttagagattaatcacaccttt 44204123  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 44191759 - 44191873
Alignment:
Q  9 agcagagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct 108  Q
    |||| ||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||| ||||| ||| || | | ||||||||||||||||||    
T  44191759 agcaaagacaattactttattagtaaactcaaagtactttgtcaaatatttgaaccttttcaaactgatgtgaacaatttgctgatgcataatcctttct 44191858  T
Q  109 tttatacacttaaac 123  Q
    ||||||||| |||||    
T  44191859 tttatacacgtaaac 44191873  T

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