View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19258_high_15 (Length: 260)

Name: NF19258_high_15
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19258_high_15
NF19258_high_15
[»] chr4 (3 HSPs)
chr4 (1-247)||(18460771-18461018)
chr4 (110-152)||(16572984-16573026)
chr4 (127-161)||(24275113-24275147)
[»] chr1 (5 HSPs)
chr1 (86-162)||(28020189-28020265)
chr1 (97-161)||(11915770-11915834)
chr1 (82-155)||(37960283-37960356)
chr1 (110-163)||(2066074-2066127)
chr1 (127-155)||(48854360-48854388)
[»] chr5 (4 HSPs)
chr5 (102-163)||(41404920-41404981)
chr5 (127-162)||(20984704-20984739)
chr5 (127-162)||(43399902-43399937)
chr5 (126-162)||(8942045-8942081)
[»] chr3 (2 HSPs)
chr3 (86-162)||(17263655-17263730)
chr3 (86-147)||(20452160-20452221)
[»] chr7 (7 HSPs)
chr7 (85-160)||(5643751-5643826)
chr7 (85-160)||(5649603-5649678)
chr7 (102-155)||(25256044-25256097)
chr7 (99-153)||(9895165-9895219)
chr7 (127-164)||(35124056-35124093)
chr7 (109-161)||(21304560-21304612)
chr7 (101-155)||(15126082-15126135)
[»] chr6 (6 HSPs)
chr6 (99-165)||(10587479-10587545)
chr6 (86-161)||(26198541-26198616)
chr6 (99-161)||(25329244-25329306)
chr6 (99-160)||(6059154-6059215)
chr6 (89-150)||(33024009-33024070)
chr6 (101-162)||(3731331-3731393)
[»] chr8 (1 HSPs)
chr8 (106-147)||(10831555-10831596)
[»] chr2 (1 HSPs)
chr2 (121-162)||(42562924-42562965)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 18460771 - 18461018
Alignment:
Q  1 atatataattataagactcaagttgagttggatcaagttggagaaggtatacatactttaatatgatattggaaaaaattccgtagtctctttgacatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  18460771 atatataattataagactcaagttgagttggatcaagttggagaaggtatacatactttaatataatattggaaaaaattccgtagtctctttggcatac 18460870  T
Q  101 cttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaaatatggtattggaaatttaaccaggtatgtaggagttga 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18460871 ctt-tgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaattatggtattggaaatttaaccaggtatgtaggagttga 18460969  T
Q  201 atgatttctttaa--atatatatacacacacagacatgtatgcgttact 247  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  18460970 atgatttctttaaatatatatatacacacacagacatgtatgcgttact 18461018  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 16572984 - 16573026
Alignment:
Q  110 aagagattgcgtgtcagtgttaatatatatcatttttgtttgt 152  Q
    |||||||||| | ||||||||||||||||||||||||| ||||    
T  16572984 aagagattgcttatcagtgttaatatatatcatttttgcttgt 16573026  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 24275113 - 24275147
Alignment:
Q  127 tgttaatatatatcatttttgtttgttaagaaaaa 161  Q
    ||||||||||||||||||||||||||||| |||||    
T  24275113 tgttaatatatatcatttttgtttgttaaaaaaaa 24275147  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 28020265 - 28020189
Alignment:
Q  86 gtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    |||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  28020265 gtctctttggtacaccttgtgctgaagagattgcttgtcagtgttaatatatatcatttttgcttgttaaaaaaaaa 28020189  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 11915834 - 11915770
Alignment:
Q  97 ataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaa 161  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  11915834 ataccttgtgccaaagagattgcttgtcagtgttaatatatatcatttttgcttgttaaaaaaaa 11915770  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 37960283 - 37960356
Alignment:
Q  82 cgtagtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaa 155  Q
    ||||||||||||   | ||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  37960283 cgtagtctctttagtacaccttatgttgaagagagtgcgtgtcagtgttaatatatatcatttttgcttgttaa 37960356  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 2066074 - 2066127
Alignment:
Q  110 aagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaaat 163  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  2066074 aagagattgcatgttagtgttaatatatatcatttttgcttgttaaaaaaaaat 2066127  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 48854388 - 48854360
Alignment:
Q  127 tgttaatatatatcatttttgtttgttaa 155  Q
    |||||||||||||||||||||||||||||    
T  48854388 tgttaatatatatcatttttgtttgttaa 48854360  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 41404920 - 41404981
Alignment:
Q  102 ttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaaat 163  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||    
T  41404920 ttgtgctgaagagattgtttgtcagtgttaatatatatcatttttgcttgttaaaaaaaaat 41404981  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 20984739 - 20984704
Alignment:
Q  127 tgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    ||||||||||||||||||||||||||||| ||||||    
T  20984739 tgttaatatatatcatttttgtttgttaaaaaaaaa 20984704  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 43399937 - 43399902
Alignment:
Q  127 tgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    ||||||||||||||||||||||||||||| ||||||    
T  43399937 tgttaatatatatcatttttgtttgttaaaaaaaaa 43399902  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 8942045 - 8942081
Alignment:
Q  126 gtgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  8942045 gtgttaatatatttcatttttgtttgttaaaaaaaaa 8942081  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 17263655 - 17263730
Alignment:
Q  86 gtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    |||||||||| | ||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||||    
T  17263655 gtctctttgatacaccttgtgctgaagagattgcttgtcagtgtt-atacatatcatttttgcttgttaaaaaaaaa 17263730  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 20452221 - 20452160
Alignment:
Q  86 gtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttg 147  Q
    |||||||||  | |||||||||||||||||||  |||||||||||||||||||  |||||||    
T  20452221 gtctctttggtacaccttgtgctgaagagattttgtgtcagtgttaatatatacgatttttg 20452160  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 5643826 - 5643751
Alignment:
Q  85 agtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaa 160  Q
    ||||||||||  | ||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||    
T  5643826 agtctctttggtacaccttatgctgaagagattgtgtgtcagtattaatatatatcatttttgcttgttaaaaaaa 5643751  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 5649678 - 5649603
Alignment:
Q  85 agtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaa 160  Q
    ||||||||||  | ||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||    
T  5649678 agtctctttggtacaccttatgctgaagagattgtgtgtcagtattaatatatatcatttttgcttgttaaaaaaa 5649603  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 25256044 - 25256097
Alignment:
Q  102 ttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaa 155  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||| |||||||    
T  25256044 ttgtgctgaagaggttgcttgtcagtgttaatacatatcatttttgcttgttaa 25256097  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 9895219 - 9895165
Alignment:
Q  99 accttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgtt 153  Q
    ||||||| ||||  ||||||| ||||||||||||||||||||||||||| |||||    
T  9895219 accttgtactgagaagattgcttgtcagtgttaatatatatcatttttgcttgtt 9895165  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 35124093 - 35124056
Alignment:
Q  127 tgttaatatatatcatttttgtttgttaagaaaaaata 164  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  35124093 tgttaatatatatcatttttgtttgttaaaaaaaaata 35124056  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 21304612 - 21304560
Alignment:
Q  109 gaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaa 161  Q
    |||||||||| ||||| || |||||||||||||||||| |||||||| |||||    
T  21304612 gaagagattgtgtgtctgtattaatatatatcatttttttttgttaaaaaaaa 21304560  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 15126082 - 15126135
Alignment:
Q  101 cttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaa 155  Q
    ||||||||||||||||||  ||||| ||| |||||||||||||||| ||||||||    
T  15126082 cttgtgctgaagagattgtttgtcactgtgaatatatatcattttt-tttgttaa 15126135  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 10587479 - 10587545
Alignment:
Q  99 accttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaaatat 165  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||| | ||||||| |||||||||    
T  10587479 accttgtgctgaagaggttgcttgtcaatgttaatatatatcattttcgcttgttaaaaaaaaatat 10587545  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 26198541 - 26198616
Alignment:
Q  86 gtctctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaa 161  Q
    |||||||||| | ||||| ||| ||||||||||| ||||| | ||||||||||||||||||| ||||||| |||||    
T  26198541 gtctctttgatacaccttatgccgaagagattgcttgtcaatattaatatatatcatttttgcttgttaaaaaaaa 26198616  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 25329306 - 25329244
Alignment:
Q  99 accttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaaa 161  Q
    ||||| ||| ||||||||||| ||||| | ||||||||||||||||||| ||||||| |||||    
T  25329306 accttatgccgaagagattgcttgtcaatattaatatatatcatttttgcttgttaaaaaaaa 25329244  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 6059154 - 6059215
Alignment:
Q  99 accttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgtttgttaagaaaa 160  Q
    ||||||| ||||||||||| | | |||||| |||||||||||||||||| ||||||| ||||    
T  6059154 accttgtactgaagagatttcttatcagtgctaatatatatcatttttgcttgttaaaaaaa 6059215  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 33024070 - 33024009
Alignment:
Q  89 tctttgacataccttgtgctgaagagattgcgtgtcagtgttaatatatatcatttttgttt 150  Q
    ||||||| |||  ||||||| |||||||| | ||||| ||||||||||||||||||||||||    
T  33024070 tctttgatataatttgtgctcaagagattacttgtcattgttaatatatatcatttttgttt 33024009  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 3731393 - 3731331
Alignment:
Q  101 cttgtgctgaagagattgcgt-gtcagtgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    ||||||||||||  ||||||| |||||||||||||||  ||||||| ||||||||| ||||||    
T  3731393 cttgtgctgaagcaattgcgttgtcagtgttaatataattcattttggtttgttaaaaaaaaa 3731331  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 10831555 - 10831596
Alignment:
Q  106 gctgaagagattgcgtgtcagtgttaatatatatcatttttg 147  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  10831555 gctgaagagattgtttgtcagtgttaatatatatcatttttg 10831596  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 42562965 - 42562924
Alignment:
Q  121 tgtcagtgttaatatatatcatttttgtttgttaagaaaaaa 162  Q
    |||| |||||||||||| ||||||||||||||||| ||||||    
T  42562965 tgtcggtgttaatatatttcatttttgtttgttaaaaaaaaa 42562924  T

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