View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19258_high_18 (Length: 251)

Name: NF19258_high_18
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19258_high_18
NF19258_high_18
[»] chr5 (8 HSPs)
chr5 (1-236)||(41169223-41169458)
chr5 (7-54)||(825074-825122)
chr5 (3-44)||(3771239-3771280)
chr5 (5-54)||(3907729-3907778)
chr5 (9-54)||(4190074-4190119)
chr5 (9-54)||(27195267-27195312)
chr5 (5-54)||(36059282-36059331)
chr5 (191-220)||(38843765-38843794)
[»] chr4 (7 HSPs)
chr4 (5-54)||(19382312-19382361)
chr4 (7-54)||(33414018-33414065)
chr4 (5-54)||(16457935-16457984)
chr4 (5-54)||(21433948-21433997)
chr4 (5-51)||(2247654-2247700)
chr4 (9-54)||(41840671-41840716)
chr4 (5-54)||(45654086-45654135)
[»] chr3 (4 HSPs)
chr3 (5-54)||(11532510-11532559)
chr3 (5-54)||(3901568-3901617)
chr3 (5-58)||(35357392-35357445)
chr3 (5-54)||(3901514-3901563)
[»] chr7 (4 HSPs)
chr7 (9-54)||(2276292-2276337)
chr7 (11-54)||(29356932-29356975)
chr7 (3-54)||(49106978-49107029)
chr7 (9-58)||(7526129-7526178)
[»] chr6 (2 HSPs)
chr6 (5-54)||(1473630-1473679)
chr6 (5-54)||(12731629-12731678)
[»] chr2 (5 HSPs)
chr2 (9-54)||(1469754-1469799)
chr2 (9-44)||(44247563-44247598)
chr2 (9-52)||(45300446-45300489)
chr2 (5-58)||(1469814-1469867)
chr2 (5-54)||(18719746-18719795)
[»] chr1 (6 HSPs)
chr1 (5-54)||(2542777-2542826)
chr1 (5-50)||(34437617-34437662)
chr1 (179-220)||(36801891-36801932)
chr1 (9-54)||(40669008-40669053)
chr1 (9-54)||(49822607-49822652)
chr1 (7-55)||(39131640-39131688)
[»] chr8 (3 HSPs)
chr8 (5-54)||(40696203-40696252)
chr8 (5-57)||(35586416-35586467)
chr8 (6-54)||(42072675-42072723)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41169458 - 41169223
Alignment:
Q  1 ctcgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtgttactagcatttatgacacaatcttaaattaattttatttgagca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41169458 ctcgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtgttactagcattcatgacacaatcttaaattaattttatttgagca 41169359  T
Q  101 tacactcacaaatgnnnnnnnnttaaagaagaatatatttaaaggatgtgattaaatttcnnnnnnnnnnnnnnaccat--tgtgtgcgcgtccaaataa 198  Q
    ||||||||||||||        ||||||||||||||| ||||||||||||||||||||||              |||||  |||||||||||||||||||    
T  41169358 tacactcacaaatg-aaaaaaattaaagaagaatatacttaaaggatgtgattaaatttcttttttaattttttaccattgtgtgtgcgcgtccaaataa 41169260  T
Q  199 atttgatttgagtttgtgcccaaatataaatttaccat 236  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  41169259 atttgatttgagtttgtg-acaaatataaatttaccat 41169223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 825122 - 825074
Alignment:
Q  7 tgatttggtgg-aatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  825122 tgatttggtggcaatcaatgtgaattttaaccaatcaaatagagtgtgt 825074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 3771239 - 3771280
Alignment:
Q  3 cgcatgatttggtggaatccatgtgaatttcaaccaatcaaa 44  Q
    ||||||||||||||||| | |||||||||| |||||||||||    
T  3771239 cgcatgatttggtggaaccaatgtgaattttaaccaatcaaa 3771280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 3907729 - 3907778
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||| | |||||||||||| ||||||||||| ||| |||||    
T  3907729 catgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgt 3907778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 4190119 - 4190074
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||| ||| |||||||||||||| ||||||||||| |||||||||    
T  4190119 atttgttgggatccatgtgaattttaaccaatcaaagagagtgtgt 4190074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 27195312 - 27195267
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    |||||||||||||||||||||||| || |||| ||| |||||||||    
T  27195312 atttggtggaatccatgtgaattttaatcaattaaaaagagtgtgt 27195267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 36059282 - 36059331
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||| ||| |||||||| ||||| ||||||||||||| |||||||    
T  36059282 catgatttgatgggatccatgtaaattttaaccaatcaaataaagtgtgt 36059331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 38843794 - 38843765
Alignment:
Q  191 ccaaataaatttgatttgagtttgtgccca 220  Q
    ||||||||||||||||||||||||||||||    
T  38843794 ccaaataaatttgatttgagtttgtgccca 38843765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 19382361 - 19382312
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  19382361 catgatttggtgggatccatgtgaattttaaccaatcaaatagagtgtgt 19382312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 33414065 - 33414018
Alignment:
Q  7 tgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  33414065 tgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgt 33414018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 16457984 - 16457935
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||| ||| |||||||||||||| ||||||||||| |||||||||    
T  16457984 catgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgt 16457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 21433948 - 21433997
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  21433948 catgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgt 21433997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 2247654 - 2247700
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtg 51  Q
    ||||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  2247654 catgatttggtgggatccatgttaattttaaccaatcaaagagagtg 2247700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 41840671 - 41840716
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    |||| ||||||  ||||||||||| |||||||||||||||||||||    
T  41840671 atttagtggaactcatgtgaattttaaccaatcaaatagagtgtgt 41840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 45654086 - 45654135
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||| ||| |||||||||||||| ||||||||||| | |||||||    
T  45654086 catgatttgatgggatccatgtgaattttaaccaatcaaaaaaagtgtgt 45654135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 11532510 - 11532559
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  11532510 catgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgt 11532559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 3901568 - 3901617
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||| | |||||||||||| ||||||||||| |||||||||    
T  3901568 catgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgt 3901617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 35357392 - 35357445
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtgtta 58  Q
    ||||||||||| | | |||||||||||| ||||||||||| |||||||||||||    
T  35357392 catgatttggtaggacccatgtgaattttaaccaatcaaagagagtgtgtgtta 35357445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 3901563 - 3901514
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||| | |||||||||||| ||||||||||| ||| |||||    
T  3901563 catgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgt 3901514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 2276337 - 2276292
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||    
T  2276337 atttggtgggatccatgtgaattttaaccaatcaaagagagtgtgt 2276292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 29356975 - 29356932
Alignment:
Q  11 ttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||    
T  29356975 ttggtggaacccatgtgaattttaaccaatcaaagagagtgtgt 29356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 49106978 - 49107029
Alignment:
Q  3 cgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||||| | | |||||||||| ||||||||||| |||||||||    
T  49106978 cgcatgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtgt 49107029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 7526178 - 7526129
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtgtta 58  Q
    ||||||||| |||||||||||||| ||| |||||||  ||||||||||||    
T  7526178 atttggtgggatccatgtgaattttaacaaatcaaagtgagtgtgtgtta 7526129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 1473679 - 1473630
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||||| |||||||||||| ||||||||||| | |||||||    
T  1473679 catgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgt 1473630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 12731629 - 12731678
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||||| | |||| ||||| ||||||||||| |||||||||    
T  12731629 catgatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgt 12731678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 1469799 - 1469754
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||    
T  1469799 atttggtggattccatgtgaattttaaccaattaaatagagtgtgt 1469754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 44247598 - 44247563
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaa 44  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44247598 atttggtggaacccatgtgaatttcaaccaatcaaa 44247563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 45300446 - 45300489
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgt 52  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||    
T  45300446 atttgatggaatccatgtgaattttaaccaatcaaaaagagtgt 45300489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 1469814 - 1469867
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtgtta 58  Q
    |||||||| |||| |||||||||||||| ||||||| ||| | |||||||||||    
T  1469814 catgattttgtgggatccatgtgaattttaaccaataaaaaaaagtgtgtgtta 1469867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 18719795 - 18719746
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    |||||||||||||||  | ||||||||| ||||||||||| |||||||||    
T  18719795 catgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgt 18719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 2542777 - 2542826
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||| |||||    
T  2542777 catgatttggtggaagccatgtgaattttaaccaatcaaagagaatgtgt 2542826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 34437662 - 34437617
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagt 50  Q
    ||||||||||||| | |||||||||||| ||||||||||| |||||    
T  34437662 catgatttggtgggacccatgtgaattttaaccaatcaaagagagt 34437617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 36801932 - 36801891
Alignment:
Q  179 ttgtgtgcgcgtccaaataaatttgatttgagtttgtgccca 220  Q
    ||||||| ||| |||||||||||||||||| |||||||||||    
T  36801932 ttgtgtgtgcgcccaaataaatttgatttgggtttgtgccca 36801891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 40669008 - 40669053
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||| || ||||||||| ||||||||||| |||||||||    
T  40669008 atttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgt 40669053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 49822607 - 49822652
Alignment:
Q  9 atttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||| ||| |||||||||||||| ||||||||||| |||||||||    
T  49822607 atttgatgggatccatgtgaattttaaccaatcaaagagagtgtgt 49822652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 39131640 - 39131688
Alignment:
Q  7 tgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtg 55  Q
    ||||||||||| | | |||||||||||||||||||||| ||| ||||||    
T  39131640 tgatttggtggcaactatgtgaatttcaaccaatcaaaaagactgtgtg 39131688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 40696252 - 40696203
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    ||||||||||||| | |||||||||||| ||| ||||||| |||||||||    
T  40696252 catgatttggtgggacccatgtgaattttaactaatcaaaaagagtgtgt 40696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 35586467 - 35586416
Alignment:
Q  5 catgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgtgtt 57  Q
    ||||||||||||| | || ||||||||| ||||||||||| ||||||||||||    
T  35586467 catgatttggtggga-ccgtgtgaattttaaccaatcaaagagagtgtgtgtt 35586416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 42072723 - 42072675
Alignment:
Q  6 atgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 54  Q
    |||||||||||| | |||||||||| | ||||||||||| |||||||||    
T  42072723 atgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgt 42072675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University