View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_high_19 (Length: 241)
Name: NF19258_high_19
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 39619366 - 39619154
Alignment:
| Q |
19 |
catctctccggtgatgctccgatgaggcttttatgatcgtttttctctgttcttgttgtggatccgtttcagatcctcgttttccctctctttgctccat |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619366 |
catctctccggtgatgctccgatgaggcttttttgatcgtttttctctgttcttgttgtggatccgtttcagatcctcgttttccctctctttgctccat |
39619267 |
T |
|
| Q |
119 |
caatttcatgtgtttctagctttttagtttgctgcagatatgttcctcctgtgtttttcggtttggttctttccggtgggttctgttatgttcgtcgaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619266 |
caatttcatgtgtttctagctttttagtttgctgcagatttgttcctcctgtgttttccggtttggttctttccggtgggttctgttatgttcgtcgaga |
39619167 |
T |
|
| Q |
219 |
tctctgtgctgct |
231 |
Q |
| |
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||| |||| |||| |
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| T |
39619166 |
tctttgtgttgct |
39619154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 17516636 - 17516846
Alignment:
| Q |
19 |
catctctccggtgatgctccgatgaggcttttatgatcgtttttctctgttcttgttgtggatccgtttcagatcctcgttttccctctctttgctccat |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17516636 |
catctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgtcttccctctctttgctccat |
17516735 |
T |
|
| Q |
119 |
caatttcatgtgtttctagctttttagtttgctgcagatatgttcctcctgtgtttttcggtttggttctttccggtgggttctgttatgttcgtcgaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17516736 |
caatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgtgttttccggtttggttctttccggtgggttctgttatgtttgtcgaga |
17516835 |
T |
|
| Q |
219 |
tctctgtgctg |
229 |
Q |
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||| ||||||| |
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| T |
17516836 |
tctgtgtgctg |
17516846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 52402708 - 52402501
Alignment:
| Q |
19 |
catctctccggtgatgctccgatgaggcttttatgatcgtttttctctgttcttgttgtggatccgtttcagatcctcgttttccctctctttgctccat |
118 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52402708 |
catctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgttttctctctctttgctccat |
52402609 |
T |
|
| Q |
119 |
caatttcatgtgtttctagctttttagtttgctgcagatatgttcctcctgtgtttttcggtttggttctttccggtgggttctgttatgttcgtcgaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
52402608 |
caatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgttttttccgatttggttctttccggtgggttctgttatgttcgtcgaga |
52402509 |
T |
|
| Q |
219 |
tctctgtg |
226 |
Q |
| |
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||| |||| |
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| T |
52402508 |
tctgtgtg |
52402501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 24610426 - 24610560
Alignment:
| Q |
55 |
tcgtttttctctgttcttgttgtggatccgtttcagatcctcgttttccctctctttgctccatcaatttcatgtgtttctagctttttagtttgctgca |
154 |
Q |
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|||||||||||| ||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24610426 |
tcgtttttctctattctttttgtggatccgtttcaaatccatgttttccctatctttgctccatcaatttcaagtgtttctagctttttagtttgctgca |
24610525 |
T |
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| Q |
155 |
gatatgttcctcctgtgtttt-tcggtttggttct |
188 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
24610526 |
gatatgttcctcctgtgttttcccggtttggttct |
24610560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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