View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_high_24 (Length: 222)
Name: NF19258_high_24
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 21650650 - 21650839
Alignment:
| Q |
14 |
tgagatgaacagtatgctgactcaaattgatcgagatcgagatgcagtggattcatttaactgcgaggttttgactgaagaaggagatccttataagaga |
113 |
Q |
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| T |
21650650 |
tgagaagaacattatgctaactcaaattgatcgagatcgagatgcagtggattcatttaactgcgaggttttgactgaagaaggagatccttataagaga |
21650749 |
T |
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| Q |
114 |
tacatatctagtggttggcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttgttctccattgagagttatgataag |
203 |
Q |
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| T |
21650750 |
tacatatatagtggttggcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttgttctccattgagagttatgataag |
21650839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 14572577 - 14572388
Alignment:
| Q |
14 |
tgagatgaacagtatgctgactcaaattgatcgagatcgagatgcagtggattcatttaactgcgaggttttgactgaagaaggagatccttataagaga |
113 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
14572577 |
tgagaagaacattatgctgactcaaattgatcgagatcgagatgcagtggattcatttaactacgagattttgactgaagaaggagatccttataagaga |
14572478 |
T |
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| Q |
114 |
tacatatctagtggttggcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttgttctccattgagagttatgataag |
203 |
Q |
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| T |
14572477 |
tacatatctagtggtgtgcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttgttctccattgagagttatgataag |
14572388 |
T |
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Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 19784531 - 19784354
Alignment:
| Q |
26 |
tatgctgactcaaattgatcgagatcgagatgcagtggattcatttaactgcgaggttttgactgaagaaggagatccttataagagatacatatctagt |
125 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19784531 |
tatgctgactcaaattgatcgagatcaagatgcagttgatgcatttaactgtgaggtttttactgaagaaggagatccttataagagatacatatctagt |
19784432 |
T |
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| Q |
126 |
ggttggcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttgttctccattgagagttatgataag |
203 |
Q |
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| T |
19784431 |
agttggcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttgttctccattgagagttatgataag |
19784354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 145764 - 145941
Alignment:
| Q |
27 |
atgctgactcaaattgatcgagatcgagatgcagtggattcatttaactgcgaggttttgactgaagaaggagatccttataagagatacatatctagtg |
126 |
Q |
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||||| |||||| ||||| |||||| ||||||||| ||| ||||| || |||||| | |||| |||| ||||||| |||||||||||||| |||||| |
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| T |
145764 |
atgctcactcaacttgatagagatcaagatgcagttgatgcatttggttgtgaggttgttgctgatgaagtagatcctcataagagatacatagctagtg |
145863 |
T |
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| Q |
127 |
gttggcatgcatttgttaaggcaagccaagttgaagttggtgataggttgttg-ttctccattgagagttatgataag |
203 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
145864 |
gttggcatgcatttgttaaggcaagtcaagttgaagttggtgataggttgttgtttctccattgagaattatgataag |
145941 |
T |
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