View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19258_high_3 (Length: 578)

Name: NF19258_high_3
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19258_high_3
NF19258_high_3
[»] chr3 (2 HSPs)
chr3 (19-566)||(16456148-16456695)
chr3 (521-573)||(7404058-7404110)
[»] chr1 (5 HSPs)
chr1 (21-405)||(44135212-44135592)
chr1 (283-404)||(44126675-44126799)
chr1 (401-475)||(44135088-44135155)
chr1 (521-571)||(47694242-47694292)
chr1 (401-446)||(44126547-44126588)
[»] chr8 (3 HSPs)
chr8 (521-573)||(25641050-25641102)
chr8 (521-573)||(27813899-27813951)
chr8 (527-571)||(4743891-4743935)
[»] chr7 (1 HSPs)
chr7 (521-573)||(4683056-4683108)
[»] chr4 (1 HSPs)
chr4 (521-573)||(53302423-53302475)
[»] chr2 (4 HSPs)
chr2 (521-573)||(30269097-30269149)
chr2 (521-573)||(31332079-31332131)
chr2 (521-573)||(31338809-31338861)
chr2 (521-574)||(31481969-31482020)
[»] chr5 (2 HSPs)
chr5 (520-573)||(37190451-37190504)
chr5 (521-573)||(7413064-7413116)
[»] chr6 (1 HSPs)
chr6 (521-573)||(30824996-30825048)


Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Original strand, 16456148 - 16456695
Alignment:
Q  19 gtttgaacattaaagaagaaaaggacataagtgatttactgaaaaataaactatttagggtcattttcttttgtacgactaaattatctcttttccaatt 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456148 gtttgaacattaaagaagaaaaggacataagtgatttattgaaaaataaactatttagggtcattttcttttgtacgactaaattatctcttttccaatt 16456247  T
Q  119 attgtcttggaccaaatcacccctttttaattattgttaggcacctaattgtccctttattgacgatggtttaggcatctaattttatagttcatagttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456248 attgtcttggaccaaatcacccctttttaattattgttaggcacctaattgtccctttattgacgatggtttaggcatctaattttatagttcatagttt 16456347  T
Q  219 tttcttaggaactcaaatttgtgtttatttttctagagcaaattgagtcacacggttttgttagagactaaaattagtctttcctctttattttatttac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456348 tttcttaggaactcaaatttgtgtttatttttctagagcaaattgagtcacacggttttgttagagactaaaattagtctttcctctttattttatttac 16456447  T
Q  319 ttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttcaacatcttaatattacttcaaatgcattaaggtttcatgggta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456448 ttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttcaacatcttaatattacttcaaatgcattaaggtttcatgggta 16456547  T
Q  419 aaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaacatttagaatatagatagatactactacatacatatgaccattag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16456548 aaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaacatttagaatatagatagatactactacatacatatgacctttag 16456647  T
Q  519 ttaaattttatttacttctctaatcttagtaatgtgattctcctgcac 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456648 ttaaattttatttacttctctaatcttagtaatgtgattctcctgcac 16456695  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 7404058 - 7404110
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||| ||||||||| ||||||||| || ||||||||||||||||| |||||||    
T  7404058 aaatattatttactcctctaatctcagaaatgtgattctcctgcatctatgct 7404110  T

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Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 21 - 405
Target Start/End: Complemental strand, 44135592 - 44135212
Alignment:
Q  21 ttgaacattaaagaagaaaa-ggacataagtgatttactgaaaaataaactatttagggtcattttcttttgtacgactaaattatctcttttccaatta 119  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  44135592 ttgaacattaaagaaaaaaaaggacataagtgatttactgaaaaataaactatttagggacattttcttttgtaggactaaattatctcttttccaatta 44135493  T
Q  120 ttgtcttggaccaaatcacccctttttaattattgttaggcacctaattgtccctttattgacgatggtttaggcatctaattttatagttcatagtttt 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| ||       
T  44135492 ttgtcttggaccaagtcacccctttttaattattgttaggcacctaattgtctctttattgacgatggtttaggcacctagttttgtagttcattgt--- 44135396  T
Q  220 ttcttaggaactcaaatttgtgtttattttt-ctagagcaaattgagtcacacggttttgttagagactaaaattagtctttcctctttattttatttac 318  Q
       |||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||  ||||||||| ||    
T  44135395 ---ttaggaactcaaatttgtatttatttttcctagagcaaattgggtcacacagttttgttagagactaaaactagtctttcctc--tattttattcac 44135301  T
Q  319 ttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttca--acatcttaatattacttcaaatgcattaa 405  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||    
T  44135300 ttaccctgagaaatctcaatttcaagttatagacgaaaaatgaagagagaatatttcaacacatcttaatattacttcaaatgcattaa 44135212  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 44126799 - 44126675
Alignment:
Q  283 agactaaaattagtcttt-cctctttattttatttacttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttcaaca-- 379  Q
    |||||||||||||||||| |||||||| | |||  |||||| |||||||| ||||||||||||| ||||||||||||| ||| || || |||||||||      
T  44126799 agactaaaattagtcttttcctctttagtatatgcacttactctgagaaatctcaatttcaagtgatagacgaaaaattaagagaaaatatttcaacacc 44126700  T
Q  380 tcttaatattacttcaaatgcatta 404  Q
    |||||||||||||||||||||||||    
T  44126699 tcttaatattacttcaaatgcatta 44126675  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 475
Target Start/End: Complemental strand, 44135155 - 44135088
Alignment:
Q  401 attaaggtttcatgggtaaaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaaca 475  Q
    |||||||||||||||||||| ||||    |||||||||||||||||||||||   ||||||||||||||||||||    
T  44135155 attaaggtttcatgggtaaattata----aaagaaaataagagaaccatata---ctacagggaagagttgaaca 44135088  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 47694242 - 47694292
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatg 571  Q
    ||||||||||||||||||||||||  ||||||||||| | || ||||||||    
T  47694242 aaattttatttacttctctaatctccgtaatgtgattattctacacctatg 47694292  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 44126588 - 44126547
Alignment:
Q  401 attaaggtttcatgggtaaaatatatataaaagaaaataagagaac 446  Q
    |||||||||||||||||||||    |||||||||||||||||||||    
T  44126588 attaaggtttcatgggtaaaa----tataaaagaaaataagagaac 44126547  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 25641102 - 25641050
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  25641102 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 25641050  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 27813951 - 27813899
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  27813951 aaattttatttacttctctaatctcagcaatgtgattctcctgcatctatgct 27813899  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 571
Target Start/End: Complemental strand, 4743935 - 4743891
Alignment:
Q  527 tatttacttctctaatcttagtaatgtgattctcctgcacctatg 571  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||    
T  4743935 tatttacttctctaatctcagtaatgtgattgccgtgcacctatg 4743891  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 4683056 - 4683108
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  4683056 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 4683108  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 53302475 - 53302423
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  53302475 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 53302423  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 30269149 - 30269097
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  30269149 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 30269097  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 31332079 - 31332131
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  31332079 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 31332131  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 31338809 - 31338861
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  31338809 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 31338861  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Complemental strand, 31482020 - 31481969
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgctt 574  Q
    |||||||||||||||||||||||  |||||||||||||| |||| |||||||||    
T  31482020 aaattttatttacttctctaatc--agtaatgtgattcttctgcccctatgctt 31481969  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 37190504 - 37190451
Alignment:
Q  520 taaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    ||||||||||||||||||| ||| |  ||||||||||||||| ||| |||||||    
T  37190504 taaattttatttacttctcgaatatctgtaatgtgattctccagcatctatgct 37190451  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 7413116 - 7413064
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    ||||||| |||||||||| ||| || ||||||||||||||| ||| |||||||    
T  7413116 aaattttttttacttctcgaatatttgtaatgtgattctccagcatctatgct 7413064  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 30825048 - 30824996
Alignment:
Q  521 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 573  Q
    ||||||||||||||  |||||||| |  ||||||||||||||||| |||||||    
T  30825048 aaattttatttactaatctaatctcatcaatgtgattctcctgcatctatgct 30824996  T

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