View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_high_4 (Length: 576)
Name: NF19258_high_4
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 50 - 558
Target Start/End: Original strand, 29089220 - 29089729
Alignment:
| Q |
50 |
atcttatcttatataagtaaatggagtattagaagtgatgtgaatttgtgaaatgtattattccctctcaaatggtggggcctcggctgaaacaagcata |
149 |
Q |
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| T |
29089220 |
atcttatcttatataagtaaatggagtattagaagtgatgtgaatttgtgaaatgtaatattccctctcaaatggtgggacctcggctgaaacaagcata |
29089319 |
T |
|
| Q |
150 |
gcggtagaggagcaaattctttcaatgttagccaatatggctaagcaaaagttgaagcaaaataaag---aaacta-tatgccacaaaagatcaaatgtc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
29089320 |
gcggtagaggagcaaattctttcaatgttagccaatatggctaagcaaaagttgaagcaaaataaaagaaaaactaatatgccacaaaagatcaaatgtc |
29089419 |
T |
|
| Q |
246 |
attttctcttggtactaatggatctcnnnnnnnnnnnnnnnnntgtttctttt-tatcaaattgtgtctcaatgcaatgatgctgatttttagaagctat |
344 |
Q |
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| T |
29089420 |
attttcttttggtactaatggatctccaaaaaaaaaata----tgtttcttttttatcaaattgtgtctcaatgcaatgatgctgatttttagaagctat |
29089515 |
T |
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| Q |
345 |
gaaatgaaacttttatttcattaatccgtgaaatgggctatttcacaaacacataagatttcttctacacatttacactcaaaggtaattaacatggaag |
444 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29089516 |
gaaataaaacttttatttcattaatccgtgaaatgggctatttcacaaacacataagatttcttctacacatatacactcaaaggtaattaacatggaag |
29089615 |
T |
|
| Q |
445 |
ataaggtatttgtgcaagtcttctttagttcaccatataactcaaaccaatgacagcataaaaacaaggtcaaggtcatacttgtggccatttacattca |
544 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29089616 |
ataaggtatttgtgcaagtcttctttagttcaccatataactcaaaccaatgacagcataaaaacaaggtcaaggccatacttgtggccatttacattca |
29089715 |
T |
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| Q |
545 |
agctcttcatcaat |
558 |
Q |
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||||||||| |||| |
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| T |
29089716 |
agctcttcaccaat |
29089729 |
T |
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