View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_high_5 (Length: 519)
Name: NF19258_high_5
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_5 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 126 - 503
Target Start/End: Complemental strand, 5987259 - 5986877
Alignment:
| Q |
126 |
gcaagtctttgagtgaaaatgacctataccaaaaccaatacgggagcacagcattcttgcatgtacatgactatgactatgctttctcaagaatttaggg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5987259 |
gcaagtctttgagtgaaaatgacctataccaaaaccaatacgggagcacagcattcttgcatgtacatgactatgactatgctttctcaagaatttaggg |
5987160 |
T |
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| Q |
226 |
tgtcaacaggttgtgagtttccaagttttataccaatatatttttagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttcaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||| ||||| |||||||||||||||||||| |
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| T |
5987159 |
tgtcaacaggttgtgagtttccaagttttataccaatatatttttaatgttaacttcatcaaaaatgtcattatcataatttcaccttataatttttcaa |
5987060 |
T |
|
| Q |
326 |
gttttataccaatcaactttgttgaaaactaatacagacattagtcctaccacctgcatgtgtgtgacacgtatcgccactacagcagctccaacaagca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5987059 |
gttttataccaatcaactttgttgaaaactaatacagacattagtcctaccacctgcatgtgtgtgacacgtatcgccactacagcagctccaacaagca |
5986960 |
T |
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| Q |
426 |
atga----tagcataccaatatactaagagaatctaatatacaatttcatattggataagaatagttt-gtccatgaggtttt |
503 |
Q |
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| T |
5986959 |
atgatagctagcataccaatatactaagagaatctaatatacaatttcatattggataagaatagtttagtccatgaggtttt |
5986877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 5987369 - 5987322
Alignment:
| Q |
16 |
taaggaaccattgctaggaaggacaaagcatctacatgattatattag |
63 |
Q |
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| T |
5987369 |
taaggaaccattgctaggaaggacaaagcatctacatgattatattag |
5987322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 5933825 - 5933797
Alignment:
| Q |
140 |
gaaaatgacctataccaaaaccaatacgg |
168 |
Q |
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| T |
5933825 |
gaaaatgacctataccaaaaccaatacgg |
5933797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 699203 - 699149
Alignment:
| Q |
270 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttca |
324 |
Q |
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| T |
699203 |
tagtgttaacttcatcagaaaagtcattctcataacttcaccataaaatttttca |
699149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 36493846 - 36493900
Alignment:
| Q |
270 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttca |
324 |
Q |
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| T |
36493846 |
tagtattaacttcaccaaaaaagttattttcatgacttcaccatagaatttttca |
36493900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 50764786 - 50764753
Alignment:
| Q |
269 |
ttagtattaacttcatcaaaaaagttattctcat |
302 |
Q |
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| T |
50764786 |
ttagtgttaacttcatcaaaaaagttattctcat |
50764753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 7940 - 7887
Alignment:
| Q |
270 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttc |
323 |
Q |
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| T |
7940 |
tagtgttaacttcatcaaaaaagtcattcttataacttcaccatagaatttttc |
7887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 41926212 - 41926159
Alignment:
| Q |
270 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttc |
323 |
Q |
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| T |
41926212 |
tagtattaacttcatcaaaaaaatcattttcataacttcaccatagaatttttc |
41926159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 31861945 - 31861897
Alignment:
| Q |
273 |
tattaacttcatcaaaaaagttattctcatagcttcaccttataatttt |
321 |
Q |
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| T |
31861945 |
tattaacttcaccaaaaaagtcattctcataacttcaccatagaatttt |
31861897 |
T |
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