View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_high_9 (Length: 360)
Name: NF19258_high_9
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 18460216 - 18460563
Alignment:
| Q |
13 |
caaggtagtttcctttcaatggacatggaaatgaagtctaatagagagtctaacatagaggttgaagttgaaagacataatcatgacaaaaatggttacc |
112 |
Q |
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| T |
18460216 |
caaggtagtttcctttcaatggacatggaaatgaagtctaatagagagtctaacatagaggttgaagttgaaagacataatcaagacaaaaatggttacc |
18460315 |
T |
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| Q |
113 |
ctttaatgagtggaaatgaaaatcatcatgatggtggttatggatcattctcaatggaagatattagaaggtttaatgttagtgagcaattagctcctag |
212 |
Q |
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| T |
18460316 |
ctttaatgagtggaaatgaaaatcatcatgatggtggttatggatcattctcaatggaagatattagaaggtttaatgttagtgagcaattagctcctag |
18460415 |
T |
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| Q |
213 |
gttccatggaaatggtgtttctctaactcttggactacctcataatgaaaatatccctctctcttcaacccaacatggatttctctctcagaatttacat |
312 |
Q |
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| T |
18460416 |
gttccatggaaatggtgtttctctaactcttggactacctcataatgaaaatatccctctctcttcaacccaacatggatttctctctcagaatttacat |
18460515 |
T |
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| Q |
313 |
ttaggagggaccattgatgaaatgggaagcaatgagaatgagttttgt |
360 |
Q |
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| T |
18460516 |
ttaggagggacgattgatgaaatgggaagcaatgagaatgagttttgt |
18460563 |
T |
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