View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19258_low_12 (Length: 287)

Name: NF19258_low_12
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19258_low_12
NF19258_low_12
[»] chr3 (11 HSPs)
chr3 (22-271)||(5490236-5490485)
chr3 (19-271)||(5503046-5503298)
chr3 (22-271)||(5455059-5455308)
chr3 (21-247)||(5484841-5485067)
chr3 (19-271)||(5853972-5854224)
chr3 (22-271)||(5525886-5526138)
chr3 (17-271)||(5446495-5446746)
chr3 (4-207)||(20343662-20343864)
chr3 (22-177)||(5848765-5848920)
chr3 (13-177)||(5828036-5828200)
chr3 (13-270)||(5802275-5802532)
[»] chr6 (1 HSPs)
chr6 (17-271)||(25809066-25809317)
[»] chr2 (3 HSPs)
chr2 (22-168)||(34194286-34194432)
chr2 (22-168)||(34217144-34217290)
chr2 (22-168)||(34205719-34205865)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 5490236 - 5490485
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5490236 aaaccaaagtatgcagccactcccaccatctttgatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 5490335  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgtttttc 221  Q
    ||||||||||| |   |  |||||| ||| ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
5490336 ctcaagctcttgttataatacgatgatgatgtatctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatttaaacgtgtttttc 5490435  T
222 ttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
5490436 ttagacatccaccagaccaatttgatgaatcccactctagttgaaatttt 5490485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 5503046 - 5503298
Alignment:
19 gtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctca 118  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
5503046 gtcaaaccaaagtaagcagccactcccaccatctctgatatctgaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattcctca 5503145  T
119 aggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgttt 218  Q
    |||||||||||| | ||  |||| |||| |||||| |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
5503146 aggctcaagctcctgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatttaaacgtgttt 5503245  T
219 ttcttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    | ||||  || ||||||||||||||||| || ||||||||| ||||| |||||    
5503246 tccttatgcacccaccagaccaatttgatgactcccactctggttgagatttt 5503298  T

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Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 5455059 - 5455308
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||||| ||||||||||||| ||||||  |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
5455059 aaaccaaagtatgcagccactcccatcatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg 5455158  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgtttttc 221  Q
    || ||| | || || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| |    
5455159 cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc 5455258  T
222 ttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    ||||||| ||||||||||||| ||| || ||||||| | |||||||||||    
5455259 ttacacacccaccagaccaatctgatgactcccactttggttgaaatttt 5455308  T

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Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 5484841 - 5485067
Alignment:
21 caaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaag 120  Q
    |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
5484841 caaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattccttaag 5484940  T
121 gctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgttttt 220  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| | ||||||||||| | |||||     
5484941 gctcaagctcttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatcgggacaatttaaatgcgttttc 5485040  T
221 cttacacatccaccagaccaatttgac 247  Q
    |||||||| |||||| ||| |||||||    
5485041 cttacacacccaccaaacctatttgac 5485067  T

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Target: chr3; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 5854224 - 5853972
Alignment:
19 gtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctca 118  Q
    |||||||||||||||||||||||| ||| ||| ||  |||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
5854224 gtcaaaccaaagtaagcagccacttccaacatatctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacactgtcatacattcctca 5854125  T
119 aggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgttt 218  Q
    |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |||  ||||||| |||||||||| || ||||||||||| |||||    
5854124 aggctcaagctcttgtcaaaccacgatgctgacgtgtctggtaacttcatgtttgcgtatggtaaaaacccatctccatagacacaatttaaacttgttt 5854025  T
219 ttcttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    | |||||||| ||||||||||||||||| || ||||||||| |||||||||||    
5854024 tccttacacacccaccagaccaatttgatgactcccactctggttgaaatttt 5853972  T

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Target: chr3; HSP #6
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 5525886 - 5526138
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||    
5525886 aaaccaaagtaagcagccactcccaccatctctgacatctgaatttgcatatgcagtgcaagaacaatttttcaaacacattgtcttacattcctcgagg 5525985  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctcca---tggagacaatttaaacgtgttt 218  Q
    ||||||||||| ||  |||| |||| |||||| |||||||||||||||||||||||  ||||||||||||| |||   | ||||||||||||| ||||||    
5525986 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatccccatcgtcgagacaatttaaaggtgttt 5526085  T
219 ttcttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    | |||||||| |||| || |||||||||| | | ||||||| |||||||||||    
5526086 tccttacacacccactagcccaatttgacaactgccactctggttgaaatttt 5526138  T

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Target: chr3; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 5446495 - 5446746
Alignment:
17 tcgtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcct 116  Q
    ||||||||||| ||||||||||||||   ||||| ||  |||||| || ||||||||||||  |||| ||||||||||||||||||||||||||||||||    
5446495 tcgtcaaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcct 5446591  T
117 caaggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgt 216  Q
    ||||||||||| |||| |   |||| |||| ||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
5446592 caaggctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgt 5446691  T
217 ttttcttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    ||| ||||| || ||||||||||||| ||| |  |||||||  ||||||||||||    
5446692 tttccttacgcacccaccagaccaatctgatgcctcccacttcagttgaaatttt 5446746  T

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Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 20343662 - 20343864
Alignment:
4 atgtccaagaatatcgtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacatt 103  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||  |||||| |||||||||||||||||||| |||| |||||||||||| |     
20343662 atgtccaa-aatattgtcaaaccaaagtaagcaaccactcccaccatctctgatatctaaatttgcatatgcagtgcaattacaatttttcaaacacgtc 20343760  T
104 gtcttacattcctcaaggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagac 203  Q
    ||||||||||||| ||||||||||||||| ||  |||| ||||| ||||| |||||||||||||||||||||||    |||||||||||||||| |||||    
20343761 gtcttacattcctgaaggctcaagctcttgtcataccatgatgccgacgtgtctggcaacttcatgtttgtgtacttcaaaaatccatctccattgagac 20343860  T
204 aatt 207  Q
    ||||    
20343861 aatt 20343864  T

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Target: chr3; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 5848920 - 5848765
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
5848920 aaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagtacagtttttcaagcacagtgtcttacattcctcaagg 5848821  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgta 177  Q
    ||||||||||| ||  |||| |||| |||||| ||||||||||||||| |||||||    
5848820 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgta 5848765  T

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Target: chr3; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 5828200 - 5828036
Alignment:
13 aatatcgtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacat 112  Q
    ||||| || ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||    
5828200 aatattgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacat 5828101  T
113 tcctcaaggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgta 177  Q
    ||||||||||||||| |||| ||  |||| |||| |||||| ||||||||||||||| |||||||    
5828100 tcctcaaggctcaagttcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgta 5828036  T

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Target: chr3; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 5802532 - 5802275
Alignment:
13 aatatcgtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacat 112  Q
    ||||| || ||||||||||||||||||||| |||||||| |  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
5802532 aatattgttaaaccaaagtaagcagccactaccaccatccctgatatctgaatttgcatatgcggtgcaagaacagtttttcaaacacattgtcttacat 5802433  T
113 tcctcaaggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaac 212  Q
    || |||||||| |||||||| |   |  |||||| ||| |||||||| |||||||||||||||||    ||||| ||||| |||| ||||||||| ||      
5802432 tcttcaaggctaaagctcttgttataatacgatgatgatgtatctggtaacttcatgtttgtgtacttcaaaaagccatcaccattgagacaattcaatt 5802333  T
213 gtgtttttcttacacatccaccagaccaatttgacgaatcccactctagttgaaattt 270  Q
     |||| | || | ||| ||||||||||||| ||| || ||||||| ||||| ||||||    
5802332 ttgttctcctcagacacccaccagaccaatctgatgactcccactgtagttcaaattt 5802275  T

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Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 25809317 - 25809066
Alignment:
17 tcgtcaaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcct 116  Q
    ||||||||||| ||||||||||||||   ||||| ||  |||||| || ||||||||||||  |||| ||||||||||||||||||||||||||||||||    
25809317 tcgtcaaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcct 25809221  T
117 caaggctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcatgtttgtgtagagtaaaaatccatctccatggagacaatttaaacgtgt 216  Q
    ||||||||||| |||| |   |||| |||| ||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
25809220 caaggctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgt 25809121  T
217 ttttcttacacatccaccagaccaatttgacgaatcccactctagttgaaatttt 271  Q
    ||| ||||| || ||||||||||||| ||| |  |||||||  ||||||||||||    
25809120 tttccttacgcacccaccagaccaatctgatgcctcccacttcagttgaaatttt 25809066  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 34194286 - 34194432
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||| ||||||||||| ||||||||||  | |||| ||||||||||||| || |||| ||||||| | | ||| | |  || |||||| || |||    
34194286 aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgagg 34194385  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcat 168  Q
     ||| ||||||||  ||||| |||  ||| |||||||||||||||||    
34194386 ttcatgctcttattaaaccaagattttgatgtatctggcaacttcat 34194432  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 34217290 - 34217144
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||| ||||||||||| ||||||||||  | |||| ||||||||||||| || |||| ||||||| | | ||| | |  || |||||| || |||    
34217290 aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgagg 34217191  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcat 168  Q
     ||| ||||||||  ||||| |||  ||| || ||||||||||||||    
34217190 ttcatgctcttattaaaccaagattttgatgtgtctggcaacttcat 34217144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 34205865 - 34205719
Alignment:
22 aaaccaaagtaagcagccactcccaccatctcgaatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattcctcaagg 121  Q
    ||||||||||| ||| ||||| ||||||||||  | |||| || |||||||||| |||||| ||||||||   | |||   | ||| |||||| ||||||    
34205865 aaaccaaagtatgcaaccacttccaccatctctgacatctaaacttgcatatgctgtgcaattacagtttcctagacaggatttctcacattcttcaagg 34205766  T
122 ctcaagctcttatcgaaccacgatgctgacgtatctggcaacttcat 168  Q
    ||||  |||||||  ||||| |||  ||| ||||| |||||||||||    
34205765 ctcatactcttattaaaccaagattttgatgtatcaggcaacttcat 34205719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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