View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_low_13 (Length: 283)
Name: NF19258_low_13
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 44203041 - 44203217
Alignment:
| Q |
9 |
agcagagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct |
108 |
Q |
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| T |
44203041 |
agcaaagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct |
44203140 |
T |
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| Q |
109 |
tttatacacttaaac--------------ctaaattgatactcttatactgctgatgtaaaatgaatgtttcgtttt |
171 |
Q |
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| T |
44203141 |
tttatacacttaaactaggagatataaagctaaattgatactcttatactgctgatgtaaaatgaatgtttcgtttt |
44203217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 44204025 - 44204123
Alignment:
| Q |
167 |
gttttcttacacatagacagtagtacctaaagcacagagctattcaaacacaaaatgagagaatatttatactacaacttagagattaatcacaccttt |
265 |
Q |
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| T |
44204025 |
gttttcttacacatagacagtagtacctaaagcacagagttattcaaacacaaaatgagagaatatttatactacaacttagagattaatcacaccttt |
44204123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 44191759 - 44191873
Alignment:
| Q |
9 |
agcagagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct |
108 |
Q |
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|||| ||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||| ||||| ||| || | | |||||||||||||||||| |
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| T |
44191759 |
agcaaagacaattactttattagtaaactcaaagtactttgtcaaatatttgaaccttttcaaactgatgtgaacaatttgctgatgcataatcctttct |
44191858 |
T |
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| Q |
109 |
tttatacacttaaac |
123 |
Q |
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| T |
44191859 |
tttatacacgtaaac |
44191873 |
T |
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