View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_low_18 (Length: 251)
Name: NF19258_low_18
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 29207818 - 29208030
Alignment:
| Q |
9 |
atatgtcgtatgcatgcttttctaaaatatatatacttttatattatgtcaattatgattcgtcacacatttgtgtgcttgtgctgatttattattttta |
108 |
Q |
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| T |
29207818 |
atatgtcgtatgcatgcttttctaaaatatac-----tttatattatgtcaattatgattcgtcacacatttgtgtgcttgtgctgatttattattttta |
29207912 |
T |
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| Q |
109 |
tatatgtaaattatcatttcacatatatgtgttattaaaagcacaaggtggcaatgcaactttgtttcatacatatataattgtgcttatttcaaaacaa |
208 |
Q |
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| T |
29207913 |
tatatgtaaattatcatttcacatatatgtgttattaaaagcacaaggtgacaatgcaac-ttgtttcatacatatataattgtgcttatttcaaaacaa |
29208011 |
T |
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| Q |
209 |
aggttgtatcactatctag |
227 |
Q |
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||||||||||||||||||| |
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| T |
29208012 |
aggttgtatcactatctag |
29208030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 38378369 - 38378289
Alignment:
| Q |
102 |
atttttatatatgtaaattatcatttcacatatatgtgttattaaaagcacaaggtggcaatgcaactttgtttcatacatat |
184 |
Q |
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||||||||| |||||| |||||||||| ||||| |||| |||| | |||||| ||||||||||||||| | | ||||||||| |
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| T |
38378369 |
atttttatacatgtaacttatcatttctcatatgtgtg--attagaggcacaaagtggcaatgcaacttcgctccatacatat |
38378289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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