View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_low_24 (Length: 227)
Name: NF19258_low_24
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 29207497 - 29207726
Alignment:
| Q |
2 |
gtctaaccaacttaaaagaaatat----ttgagtgcaaaattaagtgtggatgcctataacaactatctaaagtatgacatatcaagaccacctttttca |
97 |
Q |
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| T |
29207497 |
gtctaaccaacttaaaagaaatatatatttgagtgcaaaattaagcgtggatgcctataacaactatctaaagtatgacatatcaagaccacctttttca |
29207596 |
T |
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| Q |
98 |
aaattatttgaaaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaatagtggttcaatatatctatcatttgtagcataatactt |
197 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207597 |
aaattatttataaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaatagtggttcaatatatctatcatttgtagcataatactt |
29207696 |
T |
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| Q |
198 |
ttaacaaagtttaaagagatatgtgtagtt |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29207697 |
ttaacaaagtttaaagagatatgtgtagtt |
29207726 |
T |
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