View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_low_6 (Length: 504)
Name: NF19258_low_6
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 41169967 - 41169504
Alignment:
| Q |
20 |
atatggtgagcattatcccaaaagatcctccaaacaaataataatatgatctttagtgacgtagaaagcatgtcatcatctaatcatgcggccaattttc |
119 |
Q |
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| T |
41169967 |
atatggtgagcattatcccaaaagaccctacaaacaaataataatatgatctttagtgacgtagaaagcatgtcatcatctaatcatgcggccaattttc |
41169868 |
T |
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| Q |
120 |
attaacattctgtttgacnnnnnnngtgtaattttctccaaaaaagagttaaaccttagttacttttatttgaatattttcatactaagaaaaaagattt |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41169867 |
attaacattctgtttgactttt---gtgtaattttctccaaaaaagagttaaaccttagttacttttatttgaatattttcatactaagaaaaaagattt |
41169771 |
T |
|
| Q |
220 |
aaaacatgattacattagaaatgatgaccttagaatcacatacacaccacaccggatgtcacaattacacacctaaatatcgatagtaatttaaaaactc |
319 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
41169770 |
aaaacatgattacattagaaatgatgacctttgaatcatatacacaccacaccggatgtcacaatt--acacctaaacatcgatagtaatttaaaaactc |
41169673 |
T |
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| Q |
320 |
aattaaatgaatgtaatcacatatatgtcaatgttatatcggtgttgtaactttaaatacgcatttgtatttgatcataacatatgatcaaaaaagtgag |
419 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
41169672 |
aattaaatgaatgtaatcac--acatgtcaatgttatatcggtgttataacattaaatacgcatttgtatttgatcatatcatatgattaaaaaagtgag |
41169575 |
T |
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| Q |
420 |
aaattctaacttgcacaca--agaaatgctagtaacacatattttaacgcacatttttcaaaacactctct |
488 |
Q |
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| T |
41169574 |
aaattctaacttgcacacaagagaaatgctagtaacacatattttaacacacatttttcaacacactctct |
41169504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 41167970 - 41167932
Alignment:
| Q |
185 |
ttatttgaatattttcatactaagaaaaaagatttaaaa |
223 |
Q |
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| T |
41167970 |
ttatttgaatatttttatactaagaaataagatttaaaa |
41167932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 15134543 - 15134592
Alignment:
| Q |
439 |
agaaatgctagtaacacatattttaacgcacatttttcaaaacactctct |
488 |
Q |
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| T |
15134543 |
agaaatgctagtaacacaaattttaacacacatttttcaacacattctct |
15134592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 49822688 - 49822642
Alignment:
| Q |
442 |
aatgctagtaacacatattttaacgcacatttttcaaaacactctct |
488 |
Q |
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| T |
49822688 |
aatgctagcaacacatattataacacacatttttcaacacactctct |
49822642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 23848400 - 23848355
Alignment:
| Q |
441 |
aaatgctagtaacacatattttaacgcacatttttcaaaacactct |
486 |
Q |
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||||||||| |||||||||||||||||| | ||||||| ||||||| |
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| T |
23848400 |
aaatgctagcaacacatattttaacgcataattttcaacacactct |
23848355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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