View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_low_7 (Length: 389)
Name: NF19258_low_7
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 15454272 - 15453895
Alignment:
| Q |
1 |
ttgaattatattattttttaaaattattatcgacattgatgtgtcaatg---tccaaatatgtgtccatgtttcataagaagcaatgaattcaattttga |
97 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15454272 |
ttgaattatattattttttaaaattattatcgacgttgacgtgtcagtggtgtccagatatgtgtccatgtttcataagaagcaatgaattcaattttga |
15454173 |
T |
|
| Q |
98 |
tagaaacagtttttaactcgactttagctaccttttgggcaaactctaaacttttaaagcgnnnnnnncattaagaatcaaatggttaagaaaaagagta |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15454172 |
tagaaacagtttttaactcgactttagctaccttttgggcaaactctaaacttttaaagcgtttttttcattaagaatcaaatggttaagaaaaagagta |
15454073 |
T |
|
| Q |
198 |
attaaataatgaattttattcttaagcctttaaaagtgaaaattttcaatttagaccctctttcatgtgtaattatagtctccctttacaaaaaataaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15454072 |
attaaataatgaattttattcttaagcctttaaaagtgaaaattttcaatttagaccctctttcatgtgtaattatagtctccctttacaaaaaataaaa |
15453973 |
T |
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| Q |
298 |
caatacaactaattttacaagattagtcatagagcttcattaaaattggttaacaaaaccaaccaaaattaccctttg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15453972 |
caatacaactaattttacaagattagtcatagagcttcattaaaattggttaacaaaaccaaccaaaattaccctttg |
15453895 |
T |
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