View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19258_low_8 (Length: 383)
Name: NF19258_low_8
Description: NF19258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19258_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 3175407 - 3175763
Alignment:
| Q |
10 |
attattctggatttcagcagctgcaccattgacttcagttattctatcaaccattttagtcttttcaatgagacataagatcaataaaatagcaattgta |
109 |
Q |
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| T |
3175407 |
attattctggatttcagcagctgcaccattgacttcagttattctatcaaccattttagtcttttcaatgagacataagatcaataaaatagcaattgta |
3175506 |
T |
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| Q |
110 |
agaaaagacactctacctttgttacttttagtgcatgtttggaataatgtttgactttgacgagatcacggtcacgttgtgattctgttgaagcttcaaa |
209 |
Q |
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| T |
3175507 |
agaaaagacactctacctttgttacttttagtggatgtttggaataatgtttgactttgacgagatcacggtcacgttgtgattctgttgaagcttcaaa |
3175606 |
T |
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| Q |
210 |
gcgtagtttttgacaaaataacggtggcacacagtgattttgccaaacttagagctaatccaaacatacaagagatgttaaatacaaatgatcttattaa |
309 |
Q |
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| T |
3175607 |
gcgtagtttttgacaaaataacggtggcacacagtgattttgccaaacttagagctaatccaaacatacaagagatgttaaatacaaatgatcttattaa |
3175706 |
T |
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| Q |
310 |
taactctcttttttgctttgttttctttggaagattggtgaattgccaaagggactt |
366 |
Q |
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| T |
3175707 |
taactctcttttttactttgttttctttggaagattggtgaattgccaaagggactt |
3175763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 6011220 - 6011303
Alignment:
| Q |
195 |
tgttgaagcttcaaagcgtagtttttgacaaaataacggtggcacacagtgattttgccaaacttagagctaatccaaacataca |
279 |
Q |
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| T |
6011220 |
tgttgaagctt-aaactgtagcttttgacaaaatcagggtgggacaccatgattttgccaaacttatcgtcaatccaaacataca |
6011303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 30309731 - 30309671
Alignment:
| Q |
195 |
tgttgaagcttcaaagcgtagtttttgacaaaataacggtggcacacagtgattttgccaa |
255 |
Q |
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| T |
30309731 |
tgttgaagcttcaaagtgtagtttctgcccaaatcacagtggctcactgtgattttgccaa |
30309671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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