View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19259_high_2 (Length: 538)

Name: NF19259_high_2
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19259_high_2
NF19259_high_2
[»] chr4 (3 HSPs)
chr4 (1-522)||(54918424-54918944)
chr4 (451-522)||(54921930-54922001)
chr4 (379-480)||(54922126-54922227)


Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 54918424 - 54918944
Alignment:
Q  1 ctatccttccactcactcgaaataaaacatcagatgagtaataacaatgaaaattgttccataatatcatgaaggattaagaaaagaggtagtagagtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54918424 ctatccttccactcactcgaaataaaacatcagatgagtaaaaacaatgaaaattgttccataatatcatgaaggattaagaaaagaggtagtagagtaa 54918523  T
Q  101 aacagggatatcaaaattaaataaactaagaaaacaagataaaagatggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatgaaga 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54918524 aacagggatatcaaaattaaataaactaagaaaacgagataaaagatggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatgaaga 54918623  T
Q  201 gatcaagcatctgaaccaaatcatccgaaaccaaaaaataccaacactgtttatgtgagactgacagaggaagaaaaatgaaacgcgcttgaggaatgaa 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  54918624 gataaagcatctgaaccaaatcatccgaaaccaaaaaataccaacactgtttatgtgacattgacagaggaagaaaaatgaaacgcgcttgagggatgaa 54918723  T
Q  301 acagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54918724 acagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaa 54918823  T
Q  401 ggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgtactcattagactacttccattt 500  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  54918824 ggtatcatctttcaattctcattggaaatttgtactcattgaactactatcattttccaatgctaactcaataattgtactcattagactactttcattt 54918923  T
Q  501 ttcaagggttaatcgtttcata 522  Q
    ||||| ||||||||||||||||    
T  54918924 ttcaa-ggttaatcgtttcata 54918944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 451 - 522
Target Start/End: Original strand, 54921930 - 54922001
Alignment:
Q  451 cattttccaatgttaactcaataattgtactcattagactacttccatttttcaagggttaatcgtttcata 522  Q
    |||||||||||| |||||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||||    
T  54921930 cattttccaatgctaactccataattgtagtcattagactactaccattttccaaggcttaatcgtctcata 54922001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 480
Target Start/End: Original strand, 54922126 - 54922227
Alignment:
Q  379 aatccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgt 478  Q
    ||||||||||| |||||||||| || | ||||||||   ||| || |||||||   ||||||  |||||||||||||||||||  |||||||  ||||||    
T  54922126 aatccttaatgtcattttccaaagtttaatcattcatcactcatttgaaatttactctcattatactactatcattttccaattctaactcacaaattgt 54922225  T
Q  479 ac 480  Q
    ||    
T  54922226 ac 54922227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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