View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_1 (Length: 1083)
Name: NF19259_low_1
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 819; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 17 - 1066
Target Start/End: Complemental strand, 10196577 - 10195527
Alignment:
| Q |
17 |
atccacataacattcttattgtcaaatccctatcatagacagatacaaatcaagatgatattgtgtagaaaagttcaaaggaagttcaatgttcaattat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196577 |
atccacataacattcttattgtcaaatccctatcatagacaggtacagatcaagatgatattgtgtagaaaagttcaaaggaagttcaatgttcaattat |
10196478 |
T |
|
| Q |
117 |
atttgtgaattggggtcaccccgatatttgcgggaagatacatgattagagacaatatgnnnnnnnn-ttgagatgactatgaaatgaaaaataattgtc |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| | |
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| T |
10196477 |
atttgtgaattggggtcaccccgatatttgcgggaatatacatgattagagacaatatgaaaaaaaaattgagatgactatgaaa-----aataattatt |
10196383 |
T |
|
| Q |
216 |
taagcattattttatgcattataaattttagcacaagttgcacatatagtaaccgaaatcacatccatagttccataattcctttataaaagtatataat |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196382 |
taagcattattttatgcatta--aattttagcacaagttgcacatatagtaaccgaaatcacatccatagttccataattcctttataaaagtatataat |
10196285 |
T |
|
| Q |
316 |
ttggtaaccataatatagtcatatacatcctcctttttcatcctttttcttttcaagtactaacccaatccatttctttctttacacnnnnnnnngagca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10196284 |
ttggtaaccataatatagtcatatacatcctccttttccatcctttttcttttcaagtactaacccaatccatttctttctttacacaaaaaaa-gagca |
10196186 |
T |
|
| Q |
416 |
agaaataagaaaatgggtgctctagatttcctttcagattacttcactgtcaccccaaaaaagaaacacaaacccatgcaggtttttcactagctcctat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196185 |
agaaataagaaaatgggtgctctagatttcctttcagattacttcactgtcaccccaaaaaagaaacacaaacccatgcaggtttttcactagctcctat |
10196086 |
T |
|
| Q |
516 |
gtatcctatctcattaatagtgagcttattagtcttaagaaaattctgannnnnnnnnnnnnnnnnnnnnnctcttatagacagttgaaataaaggtgaa |
615 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
10196085 |
gtatcctatctcattaatagtgagcttattagtcttaagaaaattctgattttattttttgcaacttttttctcttatagacagttgaaataaaggtgaa |
10195986 |
T |
|
| Q |
616 |
aatggactgtgatggctgtgaaagaagagttcggaattctgttaccaacatgtcaggtatataatcatatctctctctcttcttatctcaaatcaaatgg |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195985 |
aatggactgtgatggctgtgaaagaagagttcggaattctgttaccaacatgtcaggtatataatcatatctctctctcttcttatctcaaatcaaatgg |
10195886 |
T |
|
| Q |
716 |
cataatttttaggtagtttacataataagaatgttcatattctcgatgaaggtgggttctatattttatacggtgtaaccatacttaaaaatcatttgaa |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10195885 |
cataatttttaggtagtttacataataagaatgttcatattctcaatgaaggtgggttctatattttatacggtgtaaccatacttaaaaatcacttgaa |
10195786 |
T |
|
| Q |
816 |
agttgaaactctatcgaccaacggtgctcc----ttaaaagtagatgttcacaatcttcatcgttcttatagttgagatagtgacatgatttgtgtctgt |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10195785 |
agttgaaactctatcgaccaacggtgctcctcgatcgaaagtagatgttcacaatcttcatcgttcttatagttgagatagtgacatgatctgtgtctgt |
10195686 |
T |
|
| Q |
912 |
tacttttgttattttcgactcgagaccaattatcacggtctcagtcataaaaaccgagttaaccatagtttctacttagaaat----atgttcttggcgt |
1007 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
10195685 |
tacttttgttattttcgactcgagaccaattatcacggtctcagtcataaaaaccgagttaaccatagtttctacttagaaatagtgatgttcttgtcgt |
10195586 |
T |
|
| Q |
1008 |
ttatatttcaaacgattttcaagcatataggtttacgatggaacgtctatcaaagcagt |
1066 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10195585 |
ttatatttcaaacgattttcaagcatataggtttacgatggaacgtctatcaaagcagt |
10195527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 594 - 658
Target Start/End: Original strand, 10651113 - 10651177
Alignment:
| Q |
594 |
agacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagttcggaattctgtt |
658 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
10651113 |
agacggttgaaatcaaggtgaaaatggactgtgatggatgtgaaagaagagttaggaattctgtt |
10651177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 645
Target Start/End: Original strand, 31886816 - 31886871
Alignment:
| Q |
590 |
ttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
645 |
Q |
| |
|
|||||||||||||| || || || |||||||| |||||||| |||||||||||||| |
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|
| T |
31886816 |
ttatagacagttgagatcaaagtcaaaatggattgtgatgggtgtgaaagaagagt |
31886871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 645
Target Start/End: Original strand, 54277 - 54328
Alignment:
| Q |
594 |
agacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
645 |
Q |
| |
|
|||| ||||| ||||| |||| ||||||||||||||| |||||||||||||| |
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| T |
54277 |
agacggttgagataaaagtgagaatggactgtgatggttgtgaaagaagagt |
54328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 645
Target Start/End: Original strand, 2306629 - 2306684
Alignment:
| Q |
590 |
ttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
645 |
Q |
| |
|
|||||||||||||| || || || |||||||| |||||||| |||||||||||||| |
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| T |
2306629 |
ttatagacagttgagatcaaagtcaaaatggattgtgatgggtgtgaaagaagagt |
2306684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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