View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_11 (Length: 316)
Name: NF19259_low_11
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 4296140 - 4296281
Alignment:
| Q |
165 |
ctacagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
264 |
Q |
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| T |
4296140 |
ctacagaattgctgctagggcaccatatcaaacaagtaaccaaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
4296239 |
T |
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| Q |
265 |
tcaccacaagaccacagatcagaatgtagctccagctctgtg |
306 |
Q |
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| T |
4296240 |
tcaccacaagaccacagatcagaatgtagctccagctctgtg |
4296281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 4295992 - 4296078
Alignment:
| Q |
18 |
agaggaaatgcatgtaatcagaatccaagaaaattatccccttactttttgtttcgaaatagtttgagtcgtggcaaattgataaac |
104 |
Q |
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| T |
4295992 |
agaggaaatgcatgtaatcagaatccaagaaaattatccccttactttttgtttcgaaatagtttgagtcgtggcaaattgataaac |
4296078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 4301628 - 4301727
Alignment:
| Q |
165 |
ctacagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
264 |
Q |
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| T |
4301628 |
ctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaattcatgtcatggctctccttggcaccacaa |
4301727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 4307367 - 4307472
Alignment:
| Q |
168 |
cagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaatca |
267 |
Q |
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| T |
4307367 |
cagaattgctgccaaggcaccatatcaaacaagcaatccaacaaccattaataaaccaattgatgaatctatgacatggctctctttggcaccacaatca |
4307466 |
T |
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| Q |
268 |
ccacaa |
273 |
Q |
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|||||| |
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| T |
4307467 |
ccacaa |
4307472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 4311923 - 4312024
Alignment:
| Q |
168 |
cagaattgctgctagggcaccatatcaaacaagtaacccaaaaaa---ccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
264 |
Q |
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| T |
4311923 |
cagaattgctgcaaaggcaccttatcaaacaagtaatccagcagcattccttaataagccaattgatgaatccatgtcatggctatccttggcaccacaa |
4312022 |
T |
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| Q |
265 |
tc |
266 |
Q |
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|| |
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| T |
4312023 |
tc |
4312024 |
T |
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