View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_14 (Length: 309)
Name: NF19259_low_14
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 49158513 - 49158234
Alignment:
| Q |
22 |
tacattctaattaaaattatgtacacggatatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagag |
121 |
Q |
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| T |
49158513 |
tacattctatttaaaattatgtacacggatatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagag |
49158414 |
T |
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| Q |
122 |
gtgtctgcattgcttggtcgcatcccatctgccgttggttatcaaccaacattgtctactgatcttggaggtcttcaagagcgtattacaaccaccaaga |
221 |
Q |
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| T |
49158413 |
gtgtctgcattgcttggtcgcatcccatctgccgttggttatcaaccaacgttgtctactgatcttggaggtcttcaagagcgtattacaaccaccaaga |
49158314 |
T |
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| Q |
222 |
agggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
301 |
Q |
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| T |
49158313 |
agggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
49158234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 80 - 301
Target Start/End: Complemental strand, 49153526 - 49153304
Alignment:
| Q |
80 |
atgtgatatatgatgcat-atgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccatctgccgttggttatcaaccaacattgtct |
178 |
Q |
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| T |
49153526 |
atgtgatatatgatgcctgatgtcactgtaggctaactcagaggtgtctgccctgcttggtcgtattccatctgcggttggttaccaaccaacattgtct |
49153427 |
T |
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| Q |
179 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagatc |
278 |
Q |
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| T |
49153426 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacatctgtccaggctatctatgtgcctgctgatgacttgacagatc |
49153327 |
T |
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| Q |
279 |
ctgctcctgctaccacctttgct |
301 |
Q |
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| T |
49153326 |
ctgctcctgctaccacctttgct |
49153304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 27960569 - 27960615
Alignment:
| Q |
131 |
ttgcttggtcgcatcccatctgccgttggttatcaaccaacattgtc |
177 |
Q |
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| T |
27960569 |
ttgcttggtcgtatcccatcggctgttggttatcaaccaacactgtc |
27960615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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