View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_16 (Length: 306)
Name: NF19259_low_16
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 92440 - 92594
Alignment:
| Q |
1 |
tctcattcgttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctcaccattcacgattcacccaccgccaccggccgccggcgg |
100 |
Q |
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| T |
92440 |
tctcattcgttttcttcttctcataactggaaagaaaagaagcgcttcttttctcatcctcaccattcacgattcacccaccgccaccggccgccggcgg |
92539 |
T |
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| Q |
101 |
caacatcaccttcatccaccggcaatcggtcgtgacatacgaactctccttctaa |
155 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
92540 |
taacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaa |
92594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 95407 - 95530
Alignment:
| Q |
153 |
taatataacctgattttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaacctggt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
95407 |
taatataacctgattttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaaccgagt |
95506 |
T |
|
| Q |
253 |
attatattagaagataattatcct |
276 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
95507 |
attatattagaagataattgtcct |
95530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 55403482 - 55403627
Alignment:
| Q |
10 |
ttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctcaccattcacgattcacccaccgccaccggccgccggcggcaacatcac |
109 |
Q |
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| T |
55403482 |
ttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctcaccattcacgattcacccaccgccaccggccgccggcggcaacatcac |
55403581 |
T |
|
| Q |
110 |
cttcatccaccggcaatcggtcgtgacatacgaactctccttctaa |
155 |
Q |
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| T |
55403582 |
cttcatccaccgacaatcggtcgtgacagacgaactctccttctaa |
55403627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 43326247 - 43326390
Alignment:
| Q |
10 |
ttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctca-ccattcacgattcacccaccgccaccggccgccggcggcaacatca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
43326247 |
ttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctcacccattcacgattcacccaccg---gcggcaacaggcggcaacatca |
43326343 |
T |
|
| Q |
109 |
ccttcatccaccggcaatcggtcgtgacatacgaactctccttctaa |
155 |
Q |
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| T |
43326344 |
ccttcatccaccggcaatcggtcgtgacagacgaactctccttctaa |
43326390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 40734420 - 40734311
Alignment:
| Q |
167 |
tttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaacctggtattatattagaaga |
266 |
Q |
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| T |
40734420 |
tttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaacctagtattatattagaaga |
40734321 |
T |
|
| Q |
267 |
taattatcct |
276 |
Q |
| |
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||||| |||| |
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|
| T |
40734320 |
taattgtcct |
40734311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 37125683 - 37125823
Alignment:
| Q |
10 |
ttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctcac-cattcacgattcacccaccgccaccggccgccggcggcaacatca |
108 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
37125683 |
ttttcttcttctcagaattgtaaagaaaagaagcgcttcttttctcatcctcactcattcacgattcacccac------cggccgccggcggcaacatca |
37125776 |
T |
|
| Q |
109 |
ccttcatccaccggcaatcggtcgtgacatacgaactctccttctaa |
155 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
37125777 |
ccttcatccaccggaaatcggtcgtgacagacgaactctccttctaa |
37125823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 37126396 - 37126429
Alignment:
| Q |
167 |
tttgaagaatgttgtcatataacatgggacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37126396 |
tttgaagaatgttgtcatataacatgggacaaaa |
37126429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 12307793 - 12307736
Alignment:
| Q |
94 |
ccggcggcaacatcaccttcatccaccggcaatcggtcgtgacatacgaactctcctt |
151 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
12307793 |
ccggcggcaacatcaccttcatccactggcaatcggtcatgaccgacgaactctcctt |
12307736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 12307851 - 12307804
Alignment:
| Q |
18 |
ttctcagaactggaaagaaaag-aagcgcttcttttctcatcctcacc |
64 |
Q |
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|||||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
12307851 |
ttctcagaacgggaaagaaaaggaagcgcatcttttctcatcctcacc |
12307804 |
T |
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