View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_19 (Length: 294)
Name: NF19259_low_19
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 37066548 - 37066281
Alignment:
| Q |
20 |
aggtttaattcttttctgcactgaaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacgacagacaacattaaactcatgatcatcat |
119 |
Q |
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| T |
37066548 |
aggtttaattcttttctgcactggaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacggcagacaacattaaactcatgatcatcat |
37066449 |
T |
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| Q |
120 |
catagatataaaccttctccgtttcatgatttgaaaatttgatttcaaatcaaagtcatatgtatactgtctccattctttattctttaagagtggtttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37066448 |
catagatataaaccttctccgtttcatgatttgaaaatttgatttcaaatcatagtcatatgtatactgtctccattttttattctttaagagtggtttt |
37066349 |
T |
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| Q |
220 |
ttaaacttggataaatcccaaaacgtatttatttcgtcaattttcatttagattcattcttcttctct |
287 |
Q |
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| T |
37066348 |
ttaaacttggataaatcccaaaacgtatttatttcgtcaattttcatttagattcattcttcttctct |
37066281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 41608916 - 41608778
Alignment:
| Q |
144 |
catgatttgaaaatttgatttcaaatcaaagtcatatgtatactgtctccattctttattctttaagagtggttttttaaacttggataaatcccaaaac |
243 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41608916 |
catgatttgaaaatttgatttcaaatcatagtcatatgtatactgtctccattttttattctttaagagtggttttttaaacttggataaatcccaaaac |
41608817 |
T |
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| Q |
244 |
gtatttatttcgtcaattttcatttagattcattcttct |
282 |
Q |
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| T |
41608816 |
gtatttatttcgtcaattttcatttagattcattcttct |
41608778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 41608995 - 41608914
Alignment:
| Q |
20 |
aggtttaattcttttctgcactgaaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacgacagacaacat |
101 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41608995 |
aggtttaattcttttctgcactggaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacggcagacaacat |
41608914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 39322549 - 39322454
Alignment:
| Q |
20 |
aggtttaattcttttctgcactgaaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacgacagacaacattaaactcatgatca |
115 |
Q |
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||||||||||||||||| ||||| |||||| ||||||||||| | |||||||| |||||| ||||||||| | || ||||| || ||| |||||| |
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| T |
39322549 |
aggtttaattcttttcttcactggaaaacgtcaaaacgcttatccctgcaaaaccttgtctcgacaaaacgccggaaaacatcaacctcttgatca |
39322454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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