View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_2 (Length: 901)
Name: NF19259_low_2
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 225 - 710
Target Start/End: Complemental strand, 40114858 - 40114373
Alignment:
| Q |
225 |
tgaactaaattcctctgccgaacgaagacatagacacatagtagaaactgctagagcattacctcatcatgccaacctaccatctcaattttggtcgttt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
40114858 |
tgaactaaattcctctgccgaacgaagacatagacacatagtagaaactgctagagcattactacatcatgccaacctaccatctcaattttggtcgctt |
40114759 |
T |
|
| Q |
325 |
gcatttagtacagcagcatatctaatcaacaggttgcccacaccaacactcaatatgaaaacaccctatcatacccttcataaccaaacatataatatca |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114758 |
gcatttagtacagcagcatatctaatcaacaggttgcccacaccaacactcaatatgaaaacaccctatcatacccttcataaccaaacatataatatca |
40114659 |
T |
|
| Q |
425 |
cccacctacactcttttggttgcttatgttttccatggttacgaccttacaatagcaacaaactccaacctaaatctcaaccgtgtatctttgtcggtta |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40114658 |
cccacctacactcttttggttgcttatgttttccatggttacgaccttacaatagcaacaaactccaacctaaatctcaaccgtgtatctttgttggtta |
40114559 |
T |
|
| Q |
525 |
ctcaccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgtcatgtggtcttctatgacaaccattttccctaccca |
624 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114558 |
ctcaccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgtcatgtggtcttctatgacaaccattttccctaccca |
40114459 |
T |
|
| Q |
625 |
tccttaatacaaccgacacctatctacaaaccaataccaagcatcaacccacatccaccacacatcatcctacctcttaacccacc |
710 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40114458 |
tccttaatacaactgacacctatctacaaaccaataccaagcatcaacccacatccaccacacatcatcctacctcttaaaccacc |
40114373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 40115064 - 40114887
Alignment:
| Q |
19 |
catttctcaaaatatatttggctttttcctatgaaaaataaatctgatgtctccactatatttcctcaatttaaaaatgttgttgagaaacattttaact |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115064 |
catttctcaaaatatatttggctttttcccatgaaaaataaatctgatgtctccactatatttcctcaatttaaaaatgttgttgagaaacattttaact |
40114965 |
T |
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| Q |
119 |
tccctattacttccctttactcagataatggaggagaattcataaaactaaaatcttatttgtcctccaatggtatat |
196 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114964 |
tctctattacttccctttactcagataatggaggagaattcataaaactaaaatcttatttgtcctccaatggtatat |
40114887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 748 - 896
Target Start/End: Complemental strand, 40114377 - 40114229
Alignment:
| Q |
748 |
ccaccacttacaactaatacttcacaaactgcgaccaccactacctctacatctgttgcaaatcctcaagaggcaaccttgcactcaagttcttcatcag |
847 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114377 |
ccaccacttacaactaatacttcacaaactgtgaccaccactacctctacatctgttgcaaatcctcaagaggcaaccttgcactcaagttcttcatcag |
40114278 |
T |
|
| Q |
848 |
gtaataatctgcccactacatcttctactttaaacctacctatgcttct |
896 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
40114277 |
gtaataatctgcccactacatcttctacttcaaacctacctatgattct |
40114229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 427 - 617
Target Start/End: Original strand, 3017982 - 3018172
Alignment:
| Q |
427 |
cacctacactcttttggttgcttatgttttccatggttacgaccttacaatagcaacaaactccaacctaaatctcaaccgtgtatctttgtcggttact |
526 |
Q |
| |
|
||||||||||| ||||| ||| | ||||| |||||| || |||||||| | | | ||||||||||| |||||| | | ||||| || | ||||||| |
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| T |
3017982 |
cacctacactcctttggatgcctttgtttcccatggctaaaaccttacacaaaccataaactccaacccaaatctatatcatgtatattcattggttact |
3018081 |
T |
|
| Q |
527 |
caccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgtcatgtggtcttctatgacaaccattttcc |
617 |
Q |
| |
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|||| || |||||||| ||||| || || ||||||| ||| |||||||| || || || |||||||| || ||| |||||||||||||||| |
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| T |
3018082 |
caccctcacaatatgcatatcgttgtctagatcccaaaaccaacaaaatttatacttcacgtcatgttgtattccatgacaaccattttcc |
3018172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 3017797 - 3017878
Alignment:
| Q |
248 |
gaagacatagacacatagtagaaactgctagagcattacctcatcatgccaacctaccatctcaattttggtcgtttgcatt |
329 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||| | | || ||||| || ||||||||||||||||||| |||||||| |
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| T |
3017797 |
gaagacatagacatatagctgaaaccgctagagcactcctacaccatgctaatttaccatctcaattttggtcatttgcatt |
3017878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 656189 - 656021
Alignment:
| Q |
28 |
aaatatatttggctttttcctatgaaaaataaatctgatgtctccactatatttcctcaatttaaaaatgttgttgagaaacattttaacttccctatta |
127 |
Q |
| |
|
|||||||||||| | | ||| ||||||||||||| |||||||| | ||| |||||| |||| |||| ||||||| | ||| ||||||| || ||||| | |
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| T |
656189 |
aaatatatttggttatatccattgaaaaataaatcagatgtctctattatttttcctaaattcaaaagtgttgttaaaaaatattttaatttgcctatca |
656090 |
T |
|
| Q |
128 |
cttccctttactcagataatggaggagaattcataaaactaaaatcttatttgtcctccaatggtatat |
196 |
Q |
| |
|
||| || || || || ||||| || |||| ||| ||||||||||| ||| | ||||| |||||||||| |
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| T |
656089 |
tttctctatattctgacaatggtggggaatacatcaaactaaaatcctatctctcctctaatggtatat |
656021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 640
Target Start/End: Complemental strand, 655711 - 655584
Alignment:
| Q |
512 |
tctttgtcggttactcaccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgtcatgtggtcttctatgacaacca |
611 |
Q |
| |
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||||||| || |||||||| ||||||||||| ||||| ||| | ||||| | ||| || |||| |||||||| || ||||| |||||| |||| ||||| |
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| T |
655711 |
tctttgtaggctactcaccctctcaatatgcttatcgttgcttagatcctacaaccaa-taaatctacacatctcgccatgttgtcttccatgataacca |
655613 |
T |
|
| Q |
612 |
ttttccctacccatccttaatacaaccga |
640 |
Q |
| |
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||||| || ||||||| |||||||||| |
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| T |
655612 |
ctttccatatacatccttgatacaaccga |
655584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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