View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_22 (Length: 252)
Name: NF19259_low_22
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_22 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 49593 - 49360
Alignment:
| Q |
1 |
ataaagccatgggtctgtaacacctcacattcttggtataatgttgacagcatttacgatgaaatggattattttatggaggatcagatatcaatgcaac |
100 |
Q |
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| T |
49593 |
ataaagtcattggtctctaacacctcacattcttggtataatgttgacagcatttacgatgaaatggattattttatggaggatcagatatcaatgcaac |
49494 |
T |
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| Q |
101 |
aagacaacaacaactctgaaaatattatgattttttctggttctggttttgagggtaattctttgtggaagcagcaacattaacgttaacgttaattacc |
200 |
Q |
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| T |
49493 |
aagacaacaacaactctgaaaatattatgattttttctagttctgattttgagggtaattctttgtggaagcagcaacattaacgttaacgttaatta-- |
49396 |
T |
|
| Q |
201 |
cccattggtttttagcttactactacctcttctttt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49395 |
cccattggtttttagcttactactacctcttctttt |
49360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 49594 - 49629
Alignment:
| Q |
25 |
tcacattcttggtataatgttgacagcatttacgat |
60 |
Q |
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| T |
49594 |
tcacactcttggtataatgttgacagcatttacgat |
49629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 26092918 - 26092709
Alignment:
| Q |
25 |
tcacattcttggtataatgttgacagcatttacgatgaaatggattattttatggaggatcagatatcaatgcaacaagacaacaacaactctgaaaata |
124 |
Q |
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| T |
26092918 |
tcacactcttggtataatgttgacaacatttacgataaaagggattattttatggaggatcagatatcgatgcaacaagacaacaacaactatgaaaata |
26092819 |
T |
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| Q |
125 |
ttatgattttttctggttctggttttgagggtaattctttgtggaagcagcaacattaacgttaacgttaattacccccattggtttttagcttactact |
224 |
Q |
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| T |
26092818 |
ttatgattctttttggttctggttttaagggtaattctttgtggaagcagcaacattaacgttaacgttattta--cccattggtttttagcttactact |
26092721 |
T |
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| Q |
225 |
acctcttctttt |
236 |
Q |
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|||||||||||| |
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| T |
26092720 |
acctcttctttt |
26092709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 25994782 - 25994859
Alignment:
| Q |
157 |
aattctttgtggaagcagcaacattaacgttaacgttaattacccccattggtttttagcttactactacctcttctttt |
236 |
Q |
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| T |
25994782 |
aattctttgtggaagcagcaacattaacgttaacgttaatta--cccattggtttttagcttactactaactcttctttt |
25994859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 25994680 - 25994769
Alignment:
| Q |
25 |
tcacattcttggtataatgttgacagcatttacgatgaaatggattattttatggaggatcagatatcaatgcaacaagacaacaacaac |
114 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
25994680 |
tcacactcttggtataatgttgatagcatttacgatgaaggagattattttatggaggatcagatatcaatgcaacaagacgacgacaac |
25994769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 43289638 - 43289536
Alignment:
| Q |
25 |
tcacattcttggtataatgttgacagcatttacgatgaaatggattattttatggaggatcagatatcaatgcaacaagacaacaacaactctgaaaata |
124 |
Q |
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||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43289638 |
tcacactcttggtataatcttaacagcatttacgatgaaagggattattttatggaggatcagatatcaatgcaacaagaaaacaacaactctgaaaata |
43289539 |
T |
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| Q |
125 |
tta |
127 |
Q |
| |
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||| |
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| T |
43289538 |
tta |
43289536 |
T |
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