View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19259_low_27 (Length: 219)
Name: NF19259_low_27
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 38456484 - 38456673
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456484 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
38456583 |
T |
|
| Q |
116 |
tatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456584 |
tatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
38456673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 38181124 - 38181312
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181124 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
38181223 |
T |
|
| Q |
116 |
tatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38181224 |
tatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatat |
38181312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 38190007 - 38189819
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190007 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
38189908 |
T |
|
| Q |
116 |
tatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38189907 |
tatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatat |
38189819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 38208348 - 38208536
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208348 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
38208447 |
T |
|
| Q |
116 |
tatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38208448 |
tatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatat |
38208536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 38217232 - 38217044
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217232 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttt |
38217133 |
T |
|
| Q |
116 |
tatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38217132 |
tatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatat |
38217044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 26033112 - 26032924
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataat---gtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttc |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033112 |
atgaaaaacttttagatgtcccaaacatgttctacaataatattgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttc |
26033013 |
T |
|
| Q |
113 |
ttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatat |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||| |||| |
|
|
| T |
26033012 |
ttttatatgttaaaattgtttatacgag-gtgttaaatttactgttactttcattaatttcaggg---gaagcattattggaacttcttatat |
26032924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 38447655 - 38447688
Alignment:
| Q |
37 |
caaacatgttctacaataatgtgggaagtacttc |
70 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
38447655 |
caaatatgttctacaataatgtgggaagtacttc |
38447688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 6067797 - 6067743
Alignment:
| Q |
16 |
atgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttc |
70 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
6067797 |
atgaaacacttttagatgtcccaaacatgttctacaataacgtgggaagtacttc |
6067743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 38343008 - 38343063
Alignment:
| Q |
65 |
tacttcaacattgattgataggtgagtagattatgtaattccattttcttttatat |
120 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
38343008 |
tacttctacattgattgataggtgagttgattatgcaatgccattctcttttatat |
38343063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 38447201 - 38447256
Alignment:
| Q |
65 |
tacttcaacattgattgataggtgagtagattatgtaattccattttcttttatat |
120 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
38447201 |
tacttctacattgattgataggtgagttgattatgcaatgccattctcttttatat |
38447256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University