View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19259_low_6 (Length: 361)

Name: NF19259_low_6
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19259_low_6
NF19259_low_6
[»] chr3 (7 HSPs)
chr3 (27-345)||(25092017-25092332)
chr3 (29-173)||(17715638-17715782)
chr3 (29-173)||(19016867-19017011)
chr3 (38-95)||(27044218-27044275)
chr3 (208-236)||(43921666-43921694)
chr3 (126-194)||(43921722-43921790)
chr3 (202-238)||(49861331-49861367)
[»] chr1 (7 HSPs)
chr1 (29-236)||(48632323-48632524)
chr1 (126-195)||(127939-128008)
chr1 (124-196)||(9148773-9148845)
chr1 (29-114)||(7021421-7021506)
chr1 (37-115)||(18488439-18488517)
chr1 (156-194)||(32741182-32741220)
chr1 (150-194)||(35678022-35678066)
[»] chr4 (10 HSPs)
chr4 (27-194)||(658251-658418)
chr4 (156-236)||(3420133-3420210)
chr4 (200-237)||(9120905-9120942)
chr4 (37-115)||(40289007-40289086)
chr4 (32-109)||(2641365-2641442)
chr4 (129-194)||(2641448-2641513)
chr4 (207-239)||(16410838-16410870)
chr4 (158-196)||(44508013-44508051)
chr4 (156-236)||(54305958-54306035)
chr4 (60-115)||(55680933-55680989)
[»] chr2 (6 HSPs)
chr2 (40-239)||(15989801-15989996)
chr2 (29-243)||(4747810-4748021)
chr2 (156-236)||(26576401-26576478)
chr2 (202-236)||(32200610-32200644)
chr2 (69-115)||(44649831-44649877)
chr2 (202-238)||(13039259-13039295)
[»] chr7 (5 HSPs)
chr7 (29-194)||(27616536-27616701)
chr7 (126-194)||(46014522-46014590)
chr7 (156-236)||(44572277-44572354)
chr7 (126-191)||(8799713-8799778)
chr7 (207-239)||(22291212-22291244)
[»] chr8 (4 HSPs)
chr8 (37-115)||(15131819-15131898)
chr8 (27-194)||(15850241-15850409)
chr8 (27-80)||(1226276-1226330)
chr8 (202-236)||(15131734-15131768)
[»] chr5 (2 HSPs)
chr5 (126-201)||(32676416-32676491)
chr5 (33-109)||(40838127-40838204)
[»] chr6 (5 HSPs)
chr6 (37-115)||(19294559-19294638)
chr6 (151-201)||(2602408-2602458)
chr6 (156-236)||(19294667-19294744)
chr6 (37-90)||(57227-57280)
chr6 (208-236)||(14494168-14494196)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 27 - 345
Target Start/End: Complemental strand, 25092332 - 25092017
Alignment:
Q  27 tatttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagnnnnnnnncta 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  25092332 tatttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagaaaaaaaatta 25092233  T
Q  127 ttttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccg 226  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  25092232 ttttatttaggacaccagtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgaca---cacctagtcctagaggtgtccg 25092136  T
Q  227 tgcttcatagattcttaccaactagcccaatcttagttggtaaagtgacaaataatttgagagaaacaaatattttaaccaagacataaaatgagatcaa 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25092135 tgcttcatagattcttaccaactagcccaatcttagttggtaaagtgacaaataatttgagagaaacaaatattttaaccaagacataaaatgagatcaa 25092036  T
Q  327 aagagtaatattcaagttt 345  Q
    |||||||||||||||||||    
T  25092035 aagagtaatattcaagttt 25092017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 17715782 - 17715638
Alignment:
Q  29 tttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagnnnnnnnnctatt 128  Q
    |||||||||||||| |||||||| | |||  ||| ||| |||||||  ||||||||||||||||| |||| ||||||| ||||||||        | |||    
T  17715782 tttcagacatttgtttgagttgtccaacaatgcttgtatgagtgttatataggtgtcagacaccgatctaggagtgtcaaagtaaagaaaaaatacaatt 17715683  T
Q  129 ttatttaggacaccggtcttggttgtccgacacgtgttgtacgag 173  Q
    |||||||| ||| |  |||| |||||||||||||||| |||||||    
T  17715682 ttatttagaacatcaatcttagttgtccgacacgtgtcgtacgag 17715638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 19017011 - 19016867
Alignment:
Q  29 tttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagnnnnnnnnctatt 128  Q
    |||||||||||||| |||||||| | |||  ||| ||| |||||||  ||||||||||||||||| |||| ||||||| ||||||||        | |||    
T  19017011 tttcagacatttgtttgagttgtccaacaatgcttgtatgagtgttatataggtgtcagacaccgatctaggagtgtcaaagtaaagaaaaaatacaatt 19016912  T
Q  129 ttatttaggacaccggtcttggttgtccgacacgtgttgtacgag 173  Q
    |||||||| ||| |  |||| |||||||||||||||| |||||||    
T  19016911 ttatttagaacatcaatcttagttgtccgacacgtgtcgtacgag 19016867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 27044218 - 27044275
Alignment:
Q  38 tttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggt 95  Q
    |||||||||||||||||||| |||||||| |||||||  | ||||||| |||||||||    
T  27044218 tttgtctgagttgttcgacacggctcgtatgagtgttatacaggtgtcggacaccggt 27044275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 43921694 - 43921666
Alignment:
Q  208 ctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||||||||||||||||||||||    
T  43921694 ctagtcctagaggtgtccgtgcttcatag 43921666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 43921790 - 43921722
Alignment:
Q  126 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    ||||||| |||||||||| | || ||||||||||||||||   || |||||||||| |||||| |||||    
T  43921790 attttatctaggacaccgattttagttgtccgacacgtgtcagacaagtgtcataggagtgtcggacac 43921722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 49861331 - 49861367
Alignment:
Q  202 acacacctagtcctagaggtgtccgtgcttcatagat 238  Q
    |||| |||||||||||||||||| |||||||||||||    
T  49861331 acacccctagtcctagaggtgtctgtgcttcatagat 49861367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 48632524 - 48632323
Alignment:
Q  29 tttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagnnnnnnnnctatt 128  Q
    |||||||||||||| ||||||||  ||||||||||||  |||||||  ||||||||| |||||||||||| ||||||||||| ||||        | |||    
T  48632524 tttcagacatttgtttgagttgtctgacatggctcgtgtgagtgtt--ataggtgtcggacaccggtctaggagtgtcgaagcaaagaaaaaaa-caatt 48632428  T
Q  129 ttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtg 228  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||||||| | |||||| ||||| |||   |||| ||||||||||||||||||||||    
T  48632427 ttatttaggacaccggtcttagttgtccgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcg---acacgcctagtcctagaggtgtccgtg 48632331  T
Q  229 cttcatag 236  Q
    ||||||||    
T  48632330 cttcatag 48632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 127939 - 128008
Alignment:
Q  126 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacact 195  Q
    |||||||||||||||||||||||  ||||||||||||||| |||  ||||| |||||| || ||||||||    
T  127939 attttatttaggacaccggtcttatttgtccgacacgtgtcgtaatagtgttatagaaatgccagacact 128008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 9148845 - 9148773
Alignment:
Q  124 ctattttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactg 196  Q
    |||||||||||| ||||||| |||| |||||| |||||||||||| ||||| |||||| ||| || |||||||    
T  9148845 ctattttatttaagacaccgatctttgttgtctgacacgtgttgttcgagtttcataggagtatcggacactg 9148773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 7021506 - 7021421
Alignment:
Q  29 tttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaa 114  Q
    ||||| |||||||||||| | |||||||| || ||||| | |||||  ||||||||  ||| ||||||||| ||||||||||||||    
T  7021506 tttcaaacatttgtctgaatagttcgacagggttcgtatgggtgttatataggtgttggacgccggtctaaaagtgtcgaagtaaa 7021421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 18488439 - 18488517
Alignment:
Q  37 atttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggt-ctaagagtgtcgaagtaaag 115  Q
    ||||||| ||||||| |||||||||||||| || ||||  ||||||||| ||||||||| ||| |||||||||| |||||    
T  18488439 atttgtcagagttgtccgacatggctcgtatgaatgttatataggtgtc-gacaccggtcctaggagtgtcgaattaaag 18488517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 32741182 - 32741220
Alignment:
Q  156 cgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  32741182 cgacacgtgtcgtacgagtgtcataggagtgtcagacac 32741220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 35678022 - 35678066
Alignment:
Q  150 gttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||    
T  35678022 gttgtccgacacgtgttgtacgagtgtgatactagtgtcggacac 35678066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 658418 - 658251
Alignment:
Q  27 tatttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagnnnnnnnncta 126  Q
    ||||||| ||||||| ||||||||||||| | |||||||  |||||||| ||||||||| ||||||| |||| ||||||||||||||||        | |    
T  658418 tatttcatacatttgactgagttgttcgaaacggctcgtttgagtgttgtataggtgtcggacaccgttctaggagtgtcgaagtaaagaaaaaaaacaa 658319  T
Q  127 ttttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    ||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||||| |||||    
T  658318 ttttatttaggacactggtcttggttatccgacacgtgtcgtacaagtgtcatagaagtgtcggacac 658251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 3420133 - 3420210
Alignment:
Q  156 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||| |||||| |||||||  |||||||||||| ||   ||||| ||||||| ||||||||||||||||||||||    
T  3420133 cgacacgtgtcgtacgattgtcataagagtgtcagacaccgc---aacacgcctagtcttagaggtgtccgtgcttcatag 3420210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 9120942 - 9120905
Alignment:
Q  200 caacacacctagtcctagaggtgtccgtgcttcataga 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9120942 caacacacctagtcctagaggtgtccgtgcttcataga 9120905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 40289086 - 40289007
Alignment:
Q  37 atttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtc-taagagtgtcgaagtaaag 115  Q
    |||||| |||||||| ||||||| |||||| |||||||  ||||||||| ||||||| || || ||||||||||||||||    
T  40289086 atttgtttgagttgtccgacatgactcgtatgagtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaag 40289007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 2641365 - 2641442
Alignment:
Q  32 cagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaa 109  Q
    |||||||||||||||||| ||| |||  |||||||||||||||  |||||| || ||||| | |||| ||||||||||    
T  2641365 cagacatttgtctgagtttttcaacacagctcgtacgagtgttatataggtatcggacactgatctaggagtgtcgaa 2641442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 2641448 - 2641513
Alignment:
Q  129 ttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    |||||||||||||  ||||| ||||||| |||||||| ||||||||||||| | |||||| |||||    
T  2641448 ttatttaggacactagtcttagttgtccaacacgtgtcgtacgagtgtcattggagtgtccgacac 2641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 16410838 - 16410870
Alignment:
Q  207 cctagtcctagaggtgtccgtgcttcatagatt 239  Q
    |||||||||||||||||||||||||||||||||    
T  16410838 cctagtcctagaggtgtccgtgcttcatagatt 16410870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 44508013 - 44508051
Alignment:
Q  158 acacgtgttgtacgagtgtcatagaagtgtcagacactg 196  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  44508013 acacgtgtcgtacgagtgtcataggagtgtcagacactg 44508051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 54305958 - 54306035
Alignment:
Q  156 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||| ||||| ||||||||| |||||| ||||| | ||||   | ||||||||||||||||||||| ||| ||||    
T  54305958 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgaca---cgcctagtcctagaggtgtccgtactttatag 54306035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 55680933 - 55680989
Alignment:
Q  60 gctcgtacgagtgttgcataggtgtcagacaccggtc-taagagtgtcgaagtaaag 115  Q
    ||||||| ||||||| |||||||||| ||||||| || || ||||||||||||||||    
T  55680933 gctcgtatgagtgttacataggtgtcggacaccgatcgtaggagtgtcgaagtaaag 55680989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 15989996 - 15989801
Alignment:
Q  40 tgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaagnnnnnnnnctattttatttaggac 139  Q
    |||||||||||||| ||| |||||||| || ||||  ||| ||||||||||||| | || ||||||||| ||||||          ||||||||||||||    
T  15989996 tgtctgagttgttcaacacggctcgtatgactgttatataagtgtcagacaccgatgtaggagtgtcgatgtaaaggaaaaatta-attttatttaggac 15989898  T
Q  140 accggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatagatt 239  Q
    | ||||||| ||||||||||| |||| ||| ||||||||||| |||||  |||||||   ||||||  ||||||| |||||||| |||||||||||||||    
T  15989897 atcggtcttagttgtccgacatgtgtcgtaagagtgtcataggagtgttggacactg---caacacgtctagtccaagaggtgttcgtgcttcatagatt 15989801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 4748021 - 4747810
Alignment:
Q  29 tttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtctaaga-gtgtcgaagtaaagnnnnnnnnctat 127  Q
    |||||||||||||||| |||||| ||| |||||||||| |||||||  ||||||||| ||||  |||  || | ||||||||||||||        | ||    
T  4748021 tttcagacatttgtctcagttgtccgagatggctcgtatgagtgttatataggtgtcggacattggtgcaataagtgtcgaagtaaaggaatgaa-caat 4747923  T
Q  128 tttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgt 227  Q
    ||||||| ||| ||  | ||| |||||||||||| ||  |||| |||||||||| | |||| |||||  |||||   | |||||||||||||||||||||    
T  4747922 tttatttgggatacttgccttagttgtccgacacatgccgtacaagtgtcataggattgtcggacaccacgaca---cgcctagtcctagaggtgtccgt 4747826  T
Q  228 gcttcatagattctta 243  Q
    ||||||||| ||||||    
T  4747825 gcttcataggttctta 4747810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 26576401 - 26576478
Alignment:
Q  156 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||| ||||| ||||||||| |||||| ||||| ||||||   |  |||||||||||||||||||||||||||||    
T  26576401 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgaca---cgtctagtcctagaggtgtccgtgcttcatag 26576478  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 32200644 - 32200610
Alignment:
Q  202 acacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||| ||||||||||||||||||||||||||||||    
T  32200644 acacgcctagtcctagaggtgtccgtgcttcatag 32200610  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 44649877 - 44649831
Alignment:
Q  69 agtgttgcataggtgtcagacaccggtctaagagtgtcgaagtaaag 115  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||||    
T  44649877 agtgttgtatatgtgtgggacaccggtctaagagtgtcgaagtaaag 44649831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 13039259 - 13039295
Alignment:
Q  202 acacacctagtcctagaggtgtccgtgcttcatagat 238  Q
    |||| |||||||||| |||||||||||||||||||||    
T  13039259 acacgcctagtcctataggtgtccgtgcttcatagat 13039295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 27616536 - 27616701
Alignment:
Q  29 tttcagacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtc-taagagtgtcgaagtaaagnnnnnnnnctat 127  Q
    ||||||| ||||||||||||||| ||||| |||| ||| ||||||   ||||||| | ||||||| || || ||||||||| ||||||        | |     
T  27616536 tttcagatatttgtctgagttgtccgacacggcttgtatgagtgtcatataggtgccggacaccgttcctaggagtgtcgatgtaaagaagaaaa-caaa 27616634  T
Q  128 tttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||  |||||| |||||    
T  27616635 tttatttaggacaccggtcttagttgtctgacacgtgtcgtacgagtgtcatatgagtgtcggacac 27616701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 46014522 - 46014590
Alignment:
Q  126 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||| || |||||    
T  46014522 attttatttaggacaacggtcttggttgtccgacacatgtcgtacgagtgtcataggagtttcggacac 46014590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 44572354 - 44572277
Alignment:
Q  156 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||| ||||||||||||||| |||||| ||||| |||   |||| ||||||| ||||||||||||||||||||||    
T  44572354 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcg---acacgcctagtcgtagaggtgtccgtgcttcatag 44572277  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 8799713 - 8799778
Alignment:
Q  126 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcaga 191  Q
    |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||  ||||||||    
T  8799713 attttatttaggacaccggtcttatttgtccgacacgtgatgtacaagtgtcataggcgtgtcaga 8799778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 22291212 - 22291244
Alignment:
Q  207 cctagtcctagaggtgtccgtgcttcatagatt 239  Q
    ||||||||||||||| |||||||||||||||||    
T  22291212 cctagtcctagaggtttccgtgcttcatagatt 22291244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 15131898 - 15131819
Alignment:
Q  37 atttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtc-taagagtgtcgaagtaaag 115  Q
    |||||||||||||||||||||  |||| || |||||||  ||||||||| |||||||||| || ||||||||||||||||    
T  15131898 atttgtctgagttgttcgacactgctcatatgagtgttatataggtgtcggacaccggtcgtaggagtgtcgaagtaaag 15131819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 15850409 - 15850241
Alignment:
Q  27 tatttcagacatttgtctgagttgttcgacat--ggctcgtacgagtgttgcataggtgtcagacaccggtct-aagagtgtcgaagtaaagnnnnnnnn 123  Q
    ||||||||| ||| |||| |||||| |||||   ||||| ||  ||||||  ||||||||||||||||||||| |||||||| ||| |||||            
T  15850409 tatttcagatattcgtcttagttgtccgacacacggctcttataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa-- 15850312  T
Q  124 ctattttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 194  Q
    | |||||||||||||||||| | || |||||| || |||||| ||||||||||||||| |||||| |||||    
T  15850311 caattttatttaggacaccgattttagttgtctgatacgtgtcgtacgagtgtcataggagtgtcggacac 15850241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 1226276 - 1226330
Alignment:
Q  27 tatttcagacatttgtctgagttgtt-cgacatggctcgtacgagtgttgcatag 80  Q
    ||||||| | |||||||||||||||| |||||||||||||| |||||||| ||||    
T  1226276 tatttcaaatatttgtctgagttgtttcgacatggctcgtatgagtgttgtatag 1226330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 15131768 - 15131734
Alignment:
Q  202 acacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||| ||||||||||||||||||||||||||||||    
T  15131768 acacgcctagtcctagaggtgtccgtgcttcatag 15131734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 32676491 - 32676416
Alignment:
Q  126 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgaca 201  Q
    ||||||||||||||| ||||| | | ||||| |||||||| |||| |||||||||| |||||| ||||| ||||||    
T  32676491 attttatttaggacatcggtcatagctgtccaacacgtgtcgtacaagtgtcataggagtgtcggacacggcgaca 32676416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 40838127 - 40838204
Alignment:
Q  33 agacatttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggt-ctaagagtgtcgaa 109  Q
    ||||||||||||||||||| ||||| | || ||| |||||||  |||| |||| ||||||||| | ||||||||||||    
T  40838127 agacatttgtctgagttgtccgacacgacttgtatgagtgttatatagatgtcggacaccggtccaaagagtgtcgaa 40838204  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 19294559 - 19294638
Alignment:
Q  37 atttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagacaccggtc-taagagtgtcgaagtaaag 115  Q
    |||||| ||| |||| ||||| |||||||| |||||||  | ||||||| ||||||| || |||||||||||||||||||    
T  19294559 atttgtgtgacttgtccgacacggctcgtatgagtgttatacaggtgtcggacaccgatcgtaagagtgtcgaagtaaag 19294638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 2602408 - 2602458
Alignment:
Q  151 ttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgaca 201  Q
    ||||||||||||||| ||| | ||||||||| |||||| ||||||||||||    
T  2602408 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgaca 2602458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 19294667 - 19294744
Alignment:
Q  156 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||| ||||| |||||| || |||||| ||||| ||||||   | |||| ||||||||||||| |||||||||||    
T  19294667 cgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgaca---cgcctaatcctagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 57227 - 57280
Alignment:
Q  37 atttgtctgagttgttcgacatggctcgtacgagtgttgcataggtgtcagaca 90  Q
    |||| ||| |||||| ||||| |||||||| ||||||| |||||||||||||||    
T  57227 atttatcttagttgtccgacacggctcgtatgagtgttacataggtgtcagaca 57280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 14494196 - 14494168
Alignment:
Q  208 ctagtcctagaggtgtccgtgcttcatag 236  Q
    |||||||||||||||||||||||||||||    
T  14494196 ctagtcctagaggtgtccgtgcttcatag 14494168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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