View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19259_low_9 (Length: 334)
Name: NF19259_low_9
Description: NF19259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19259_low_9 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 49628 - 49939
Alignment:
| Q |
12 |
atttacgatgaaagagattattttatgttgatcgggacaattacctttgacaaaagaggaataagataaagatcgggacaaaagaggaataagatgaagt |
111 |
Q |
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| T |
49628 |
atttacgatgaaagagattattttatgttgatcgagacaattacctttgacaaaagaggaataagataaagatcgggacaaaagaggaataagatgaagt |
49727 |
T |
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| Q |
112 |
gtgtaaactatgttgttatttctatgtttgatatatttcggcgtgtgttttttgtttagtagacagccatgataagttggtgaagttaatgattatcacg |
211 |
Q |
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| T |
49728 |
gtgtaaactatgttgttatttctatgtttgatatatttcggtgtgcgttttttgtttagtagacagctatgataagttggtgaagttaatgattatcacg |
49827 |
T |
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| Q |
212 |
ttggaattaaaagaacaacaatagaagaatgatggatcttgagccatttgatatatgaattttgttagacaagttaacgatattatggtatttttattta |
311 |
Q |
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| T |
49828 |
ttggaattaaaagaacaacaatagaagaatgatggatctggagccatttgatatatgaattttgttagacaagttaatgatattat-gtatttttattta |
49926 |
T |
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| Q |
312 |
tttatttgttcat |
324 |
Q |
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| T |
49927 |
tttatttgttcat |
49939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49553 - 49516
Alignment:
| Q |
1 |
atgttgacagcatttacgatgaaagagattattttatg |
38 |
Q |
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| T |
49553 |
atgttgacagcatttacgatgaaatggattattttatg |
49516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 22501414 - 22501360
Alignment:
| Q |
164 |
tgtttagtagacagccatgataagttggtgaagttaatgattatcacgttggaat |
218 |
Q |
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| T |
22501414 |
tgtttagtagacagttatgatgagttggtgaagttaatgattataaggttggaat |
22501360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25994696 - 25994733
Alignment:
| Q |
1 |
atgttgacagcatttacgatgaaagagattattttatg |
38 |
Q |
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| T |
25994696 |
atgttgatagcatttacgatgaaggagattattttatg |
25994733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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