View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1925R-Insertion-1 (Length: 527)
Name: NF1925R-Insertion-1
Description: NF1925R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1925R-Insertion-1 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 44261743 - 44261607
Alignment:
| Q |
8 |
actaacttcactattgaatgcacaaaatgcggtggtgtggtggattttgcttggcggccgccacaagggttacagccatggcggcgctacggaaaagccg |
107 |
Q |
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| T |
44261743 |
actaacttcactattgaatgcacaaaatgcggtggtgtggtggattttgcttggcggccgccacaagggttacagccatggcggcgctacggaaaagccg |
44261644 |
T |
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| Q |
108 |
ggtttaaattctaataaaccctataatataggtatat |
144 |
Q |
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| T |
44261643 |
ggtttaaattctaataaaccctataatataggtatat |
44261607 |
T |
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Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 181 - 348
Target Start/End: Original strand, 24936942 - 24937109
Alignment:
| Q |
181 |
tataccttacatttcaatgaattgttgcaatcaattgtcgtcttccgtgtgccttgctaataatttgataaatattcgtgcttagaagatttcagagtat |
280 |
Q |
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| T |
24936942 |
tatactttacatttcaatgaattgtttcaatctattgtcgtcctccgtctgccttactaataatttgataaatatttgtgcttagaagatttcagagtat |
24937041 |
T |
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| Q |
281 |
cctaagagtggagattaaacaagcttcatgtatccgaggtggggaggtaatactgataattttaatct |
348 |
Q |
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| T |
24937042 |
cctaatagtggagattaaacaagcttcatgtatccaaggtagggaggtgatactgaaaattttaatct |
24937109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 498
Target Start/End: Complemental strand, 42402 - 42291
Alignment:
| Q |
391 |
gctattctacaatggttgttaaataatttaattc-taagccaaatacttagtacaatctaagctcttgctctgactttggaacttct---gttattctaa |
486 |
Q |
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| T |
42402 |
gctattctacaatggtttttaaattatttatttcctaggcaaaatacatggtacaattttgcttcttgttctgattttggaacttcttttgttattctaa |
42303 |
T |
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| Q |
487 |
tttgatttttta |
498 |
Q |
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| T |
42302 |
tttgatttttta |
42291 |
T |
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