View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1925R-Insertion-10 (Length: 208)
Name: NF1925R-Insertion-10
Description: NF1925R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1925R-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 14249501 - 14249659
Alignment:
| Q |
9 |
tcctccccatagaaactccctttcaattcgaaccaacctcctccacaccttcaccggcattctcaagnnnnnnnnnnnnnntataggaattgcattcaac |
108 |
Q |
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| T |
14249501 |
tcctccccatagaaactccctttcaaatcgaaccaacctcctccacaccttcaccggaattctcaagaaagaaagataaaatataggaattgcattcaac |
14249600 |
T |
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| Q |
109 |
accgaattaagaagcactattcttcctccaaaactcaagaatttattcccccacgatat |
167 |
Q |
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| T |
14249601 |
accgaattaagaagcactattcttcctccaaaactcaagaatttattcccccacgatat |
14249659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 13310726 - 13310659
Alignment:
| Q |
97 |
attgcattcaacaccgaattaagaagcactattcttcctccaaaactcaagaatttattcccccacga |
164 |
Q |
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| T |
13310726 |
attgcattcaacatcgaattaagaagcattattctaccaccgaaactcgagaatttatttccccacga |
13310659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 29297784 - 29297721
Alignment:
| Q |
11 |
ctccccatagaaactccctttcaattcgaaccaacctcctccacaccttcaccggcattctcaa |
74 |
Q |
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| T |
29297784 |
ctccccatagaaactccctttgaattctaaccaacctcctccacaccttcaccggcattctcaa |
29297721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 29978890 - 29978954
Alignment:
| Q |
11 |
ctccccatagaaactccctttcaattcgaaccaacctcctccacaccttcaccggcattctcaag |
75 |
Q |
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| T |
29978890 |
ctccccaaaggaactccctttgaatacgaaccaacctcctccacaccttcaccagcattctcaag |
29978954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 29978979 - 29979040
Alignment:
| Q |
100 |
gcattcaacaccgaattaagaagcactattcttcctccaaaactcaagaatttattcccccacg |
163 |
Q |
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| T |
29978979 |
gcattcaacaccgaattaaggagaatgattctacctccaaaactca--aatttatttccccacg |
29979040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 47549668 - 47549729
Alignment:
| Q |
13 |
ccccatagaaactccctttcaattcgaaccaacctcctccacaccttcaccggcattctcaa |
74 |
Q |
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| T |
47549668 |
ccccataggaactccctttggattctaaccaacctcctccacaccttcaccgacattctcaa |
47549729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 4255296 - 4255357
Alignment:
| Q |
103 |
ttcaacaccgaattaagaagcactattcttcctccaaaactcaagaatttattcccccacga |
164 |
Q |
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||||||||||||||||| ||||| ||||| |||||||||||||| || ||||| |||||||| |
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| T |
4255296 |
ttcaacaccgaattaaggagcacaattctacctccaaaactcaaaaacttatttccccacga |
4255357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 4255203 - 4255261
Alignment:
| Q |
10 |
cctccccatagaaactccctttcaattcgaaccaacctcctccacaccttcaccggcat |
68 |
Q |
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| T |
4255203 |
cctccccaaaggaactccctttgtatctgaaccaacctcctccacaccttcaccggcat |
4255261 |
T |
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