View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1925_low_1 (Length: 384)
Name: NF1925_low_1
Description: NF1925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1925_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 44 - 381
Target Start/End: Original strand, 9600260 - 9600597
Alignment:
| Q |
44 |
aaatttactccaaaaggataagaacaaaatttaaaataaattaaaattacaagaatcttatcgccgttggataagaaataaacatttataatgcgtgtca |
143 |
Q |
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| T |
9600260 |
aaatttactccaaaaggataagaacaaaatttaaaataaattaaaattacaagaatcttatcgccgtcggataagaaataaacatttataatgcgtgtca |
9600359 |
T |
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| Q |
144 |
aaagaattccaaagttaaaaaataattatactattacaacttacaatttaatatacaatagtggatccatgacagcaattaatatataaaaagttcattt |
243 |
Q |
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| T |
9600360 |
aaagaattcccaagttaaaaaataattatactattacaacttacaatttaatatacaatagtggatccatgacagcaattaatatataaaaagttcattt |
9600459 |
T |
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| Q |
244 |
catcattctaacgaatgtttttgatatattccacgtttgacatgtgatggcactaaaacaatattttccatttgtacacacacttgtaagcatgattata |
343 |
Q |
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| T |
9600460 |
catcattctaacgaatgtttttgatatattccacgtttgacatgtgatggcactaaaacaatattttccatttgtacacacacttgtaagcatgattata |
9600559 |
T |
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| Q |
344 |
atccaatcttcaccatctataagtacctatgcttcttc |
381 |
Q |
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| T |
9600560 |
atccaatcttcaccatctataagtaccttggcttcttc |
9600597 |
T |
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