View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1925_low_2 (Length: 311)

Name: NF1925_low_2
Description: NF1925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1925_low_2
NF1925_low_2
[»] chr4 (3 HSPs)
chr4 (220-301)||(54746520-54746601)
chr4 (220-301)||(54763247-54763328)
chr4 (220-301)||(54770701-54770782)
[»] chr1 (1 HSPs)
chr1 (165-301)||(52096471-52096595)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 54746601 - 54746520
Alignment:
Q  220 cctgctgcaatgttgtcatgattgttattgtagacagcttccacaacctgcatacaatccatttcgatctgaatatgatgat 301  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  54746601 cctgctgcaatgttgttatgattgttattgtagacagcttccacaacctgtatacaatccattttgatctgaatatgatgat 54746520  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 54763328 - 54763247
Alignment:
Q  220 cctgctgcaatgttgtcatgattgttattgtagacagcttccacaacctgcatacaatccatttcgatctgaatatgatgat 301  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  54763328 cctgctgcaatgttgttatgattgttattgtagacagcttccacaacctgtatacaatccattttgatctgaatatgatgat 54763247  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 54770782 - 54770701
Alignment:
Q  220 cctgctgcaatgttgtcatgattgttattgtagacagcttccacaacctgcatacaatccatttcgatctgaatatgatgat 301  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  54770782 cctgctgcaatgttgttatgattgttattgtagacagcttccacaacctgtatacaatccattttgatctgaatatgatgat 54770701  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 301
Target Start/End: Complemental strand, 52096595 - 52096471
Alignment:
Q  165 tacccaaaagttggggttaattaacagcaattccatacacttattgatcatagttcctgctgcaatgttgtcatgattgttattgtagacagcttccaca 264  Q
    ||||| |||||||| ||| ||||||| ||||||| || |||||||||||||| |||||||||||| ||| | ||||            ||| ||||||||    
T  52096595 tacccgaaagttggtgttgattaacaacaattccttaaacttattgatcatacttcctgctgcaaggttttaatga------------acaacttccaca 52096508  T
Q  265 acctgcatacaatccatttcgatctgaatatgatgat 301  Q
    |||||||||||||||||||||||||||||||||||||    
T  52096507 acctgcatacaatccatttcgatctgaatatgatgat 52096471  T

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