View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1925_low_4 (Length: 238)

Name: NF1925_low_4
Description: NF1925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1925_low_4
NF1925_low_4
[»] chr8 (7 HSPs)
chr8 (38-224)||(41406348-41406535)
chr8 (1-43)||(28713143-28713185)
chr8 (1-43)||(28720490-28720532)
chr8 (1-43)||(28728132-28728174)
chr8 (1-43)||(30925633-30925675)
chr8 (1-43)||(32175004-32175046)
chr8 (1-43)||(41406835-41406877)
[»] chr3 (4 HSPs)
chr3 (1-43)||(31249301-31249343)
chr3 (3-43)||(32687939-32687979)
chr3 (1-43)||(11404939-11404981)
chr3 (3-43)||(32717570-32717610)
[»] chr5 (3 HSPs)
chr5 (1-43)||(14206439-14206481)
chr5 (1-43)||(14073101-14073143)
chr5 (6-43)||(21749264-21749301)
[»] chr1 (5 HSPs)
chr1 (1-43)||(8577481-8577523)
chr1 (3-43)||(8391317-8391357)
chr1 (1-43)||(31703457-31703499)
chr1 (1-43)||(37843411-37843453)
chr1 (1-43)||(48872930-48872972)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-43)||(18054-18096)
[»] chr7 (2 HSPs)
chr7 (1-43)||(43657065-43657107)
chr7 (1-43)||(47424964-47425006)
[»] chr4 (2 HSPs)
chr4 (1-43)||(1580262-1580304)
chr4 (1-43)||(42169703-42169745)
[»] chr6 (1 HSPs)
chr6 (1-38)||(9954598-9954635)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-45)||(5047-5091)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 41406535 - 41406348
Alignment:
Q  38 cattttctactatagaa-cacatgcttcgaaactaccaagnnnnnnncttacaaactacaaggaacaacaagagtaaacataaaatttgaacctatgatt 136  Q
    ||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41406535 cattttctactatagaaacacatgcttcgaaactaccaagttttttacttacaaactacaaggaacaacaagagtaaacataaaatttgaacctatgatt 41406436  T
Q  137 tatagtatcaatagccaaacctcttaccactagtctaattaatcacagtggtttcttccaaattacaagcaacctctgatataatatt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41406435 tatagtatcaatagccaaacctcttaccactagtctaattaatcacagtggtttcttccaaattacaagcaacctctgatataatatt 41406348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28713143 - 28713185
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||    
T  28713143 tctctcatattcacattatcttcttattttctctcttcatttt 28713185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28720490 - 28720532
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||    
T  28720490 tctctcatattcacattatcttcttattttctctcttcatttt 28720532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28728132 - 28728174
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||    
T  28728132 tctctcatattcacattatcttcttattttctctcttcatttt 28728174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30925675 - 30925633
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||    
T  30925675 tctctcatattcacattatcctcttattttctctcttcctttt 30925633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32175004 - 32175046
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||| ||||||||||||||    
T  32175004 tctctcatactcacattatcctcttattctctctcttcatttt 32175046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41406877 - 41406835
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||| ||||||||||||||    
T  41406877 tctctcatactcacattatcctcttattctctctcttcatttt 41406835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31249343 - 31249301
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  31249343 tctctcatatttacattatcctcttattctctctcttcatttt 31249301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32687979 - 32687939
Alignment:
Q  3 tctcatatttacattatcctcttattatctctcttcatttt 43  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  32687979 tctcatatttacattatcttcttattctctctcttcatttt 32687939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11404981 - 11404939
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||    
T  11404981 tctctcatacttacattatcctcttattctctctcttcttttt 11404939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32717610 - 32717570
Alignment:
Q  3 tctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||| |||||||||||||||||| ||||||||| ||||    
T  32717610 tctcatacttacattatcctcttattctctctcttcttttt 32717570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14206439 - 14206481
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  14206439 tctctcatactcacattatcctcttattatctctcttcatttt 14206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14073101 - 14073143
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| |||||||||||||||||| |||||||| |||||    
T  14073101 tctctcatacttacattatcctcttattctctctctttatttt 14073143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 21749264 - 21749301
Alignment:
Q  6 catatttacattatcctcttattatctctcttcatttt 43  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  21749264 catattcacattatcctcttattctctctcttcatttt 21749301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8577523 - 8577481
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  8577523 tctctcatatttacattatcttcttattctctctcttcatttt 8577481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 8391357 - 8391317
Alignment:
Q  3 tctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  8391357 tctcatacttacattatcctcttattctctctcttcatttt 8391317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31703499 - 31703457
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||| ||||||||||||||    
T  31703499 tctctcatactcacattatcctcttattctctctcttcatttt 31703457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37843453 - 37843411
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | ||||||| |||||||||||||||||||||||    
T  37843453 tctctcatactcacattatactcttattatctctcttcatttt 37843411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48872972 - 48872930
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||| ||||||||||||||    
T  48872972 tctctcatactcacattatcctcttattctctctcttcatttt 48872930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18054 - 18096
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||    
T  18054 tctctcatacttacattatactcttattctctctcttcatttt 18096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43657065 - 43657107
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||    
T  43657065 tctctcatattcacattatcctcttattctctctcttcctttt 43657107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47425006 - 47424964
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||||||||||||| ||||    
T  47425006 tctctcatactcacattatcctcttattatctctcttcctttt 47424964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1580304 - 1580262
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||||||||||||| ||||    
T  1580304 tctctcatactcacattatcctcttattatctctcttcttttt 1580262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42169745 - 42169703
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcatttt 43  Q
    ||||||||| | |||||||||||||||| ||||||||||||||    
T  42169745 tctctcatactcacattatcctcttattctctctcttcatttt 42169703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9954598 - 9954635
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttc 38  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9954598 tctctcatacttacattatcctcttattctctctcttc 9954635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5091 - 5047
Alignment:
Q  1 tctctcatatttacattatcctcttattatctctcttcattttct 45  Q
    ||||||||||||| |||||| ||||||| | ||||||||||||||    
T  5091 tctctcatatttatattatcttcttattctttctcttcattttct 5047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University